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LINC00176 (long intergenic non-protein coding RNA 176)

Identity

Alias_namesPRR17
NCRNA00176
proline rich 17
non-protein coding RNA 176
Alias_symbol (synonym)DKFZp434G015
FLJ27267
Other alias
HGNC (Hugo) LINC00176
LocusID (NCBI) 284739
Atlas_Id 65305
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 62669493 and ends at 62671131 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00176   27655
Cards
Entrez_Gene (NCBI)LINC00176  284739  long intergenic non-protein coding RNA 176
AliasesNCRNA00176; PRR17
GeneCards (Weizmann)LINC00176
Ensembl hg19 (Hinxton)ENSG00000196421 [Gene_View]  chr20:62669493-62671131 [Contig_View]  LINC00176 [Vega]
Ensembl hg38 (Hinxton)ENSG00000196421 [Gene_View]  chr20:62669493-62671131 [Contig_View]  LINC00176 [Vega]
ICGC DataPortalENSG00000196421
TCGA cBioPortalLINC00176
AceView (NCBI)LINC00176
Genatlas (Paris)LINC00176
WikiGenes284739
SOURCE (Princeton)LINC00176
Genetics Home Reference (NIH)LINC00176
Genomic and cartography
GoldenPath hg19 (UCSC)LINC00176  -     chr20:62669493-62671131 +  20q13.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC00176  -     20q13.33   [Description]    (hg38-Dec_2013)
EnsemblLINC00176 - 20q13.33 [CytoView hg19]  LINC00176 - 20q13.33 [CytoView hg38]
Mapping of homologs : NCBILINC00176 [Mapview hg19]  LINC00176 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK130777 AK310631 AL157500 BC033342 DA111479
RefSeq transcript (Entrez)NM_207349
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011362 NW_004929419
Consensus coding sequences : CCDS (NCBI)LINC00176
Cluster EST : UnigeneHs.97840 [ NCBI ]
CGAP (NCI)Hs.97840
Alternative Splicing GalleryENSG00000196421
Gene ExpressionLINC00176 [ NCBI-GEO ]   LINC00176 [ EBI - ARRAY_EXPRESS ]   LINC00176 [ SEEK ]   LINC00176 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00176 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284739
GTEX Portal (Tissue expression)LINC00176
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZNR8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZNR8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZNR8
Splice isoforms : SwissVarQ6ZNR8
PhosPhoSitePlusQ6ZNR8
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00176
DMDM Disease mutations284739
Blocks (Seattle)LINC00176
SuperfamilyQ6ZNR8
Human Protein AtlasENSG00000196421
Peptide AtlasQ6ZNR8
HPRD17341
IPIIPI00410427   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZNR8
IntAct (EBI)Q6ZNR8
FunCoupENSG00000196421
BioGRIDLINC00176
STRING (EMBL)LINC00176
ZODIACLINC00176
Ontologies - Pathways
QuickGOQ6ZNR8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00176
Atlas of Cancer Signalling NetworkLINC00176
Wikipedia pathwaysLINC00176
Orthology - Evolution
OrthoDB284739
GeneTree (enSembl)ENSG00000196421
Phylogenetic Trees/Animal Genes : TreeFamLINC00176
HOVERGENQ6ZNR8
HOGENOMQ6ZNR8
Homologs : HomoloGeneLINC00176
Homology/Alignments : Family Browser (UCSC)LINC00176
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00176 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00176
dbVarLINC00176
ClinVarLINC00176
1000_GenomesLINC00176 
Exome Variant ServerLINC00176
ExAC (Exome Aggregation Consortium)LINC00176 (select the gene name)
Genetic variants : HAPMAP284739
Genomic Variants (DGV)LINC00176 [DGVbeta]
DECIPHER (Syndromes)20:62669493-62671131  ENSG00000196421
CONAN: Copy Number AnalysisLINC00176 
Mutations
ICGC Data PortalLINC00176 
TCGA Data PortalLINC00176 
Broad Tumor PortalLINC00176
OASIS PortalLINC00176 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00176
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00176
DgiDB (Drug Gene Interaction Database)LINC00176
DoCM (Curated mutations)LINC00176 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00176 (select a term)
intoGenLINC00176
Cancer3DLINC00176(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00176
Genetic Testing Registry LINC00176
NextProtQ6ZNR8 [Medical]
TSGene284739
GENETestsLINC00176
Huge Navigator LINC00176 [HugePedia]
snp3D : Map Gene to Disease284739
BioCentury BCIQLINC00176
ClinGenLINC00176
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284739
Chemical/Pharm GKB GenePA165392421
Clinical trialLINC00176
Miscellaneous
canSAR (ICR)LINC00176 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00176
EVEXLINC00176
GoPubMedLINC00176
iHOPLINC00176
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:11:12 CET 2017

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