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LINC00189 (long intergenic non-protein coding RNA 189)

Identity

Alias_namesC21orf109
NCRNA00189
chromosome 21 open reading frame 109
non-protein coding RNA 189
Other alias
HGNC (Hugo) LINC00189
LocusID (NCBI) 193629
Atlas_Id 65307
Location 21q21.3  [Link to chromosome band 21q21]
Location_base_pair Starts at 29193480 and ends at 29288205 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00189   18461
Cards
Entrez_Gene (NCBI)LINC00189  193629  long intergenic non-protein coding RNA 189
AliasesC21orf109; NCRNA00189
GeneCards (Weizmann)LINC00189
Ensembl hg19 (Hinxton)ENSG00000215533 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000215533 [Gene_View]  chr21:29193480-29288205 [Contig_View]  LINC00189 [Vega]
ICGC DataPortalENSG00000215533
TCGA cBioPortalLINC00189
AceView (NCBI)LINC00189
Genatlas (Paris)LINC00189
WikiGenes193629
SOURCE (Princeton)LINC00189
Genetics Home Reference (NIH)LINC00189
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00189  -     chr21:29193480-29288205 +  21q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00189  -     21q21.3   [Description]    (hg19-Feb_2009)
EnsemblLINC00189 - 21q21.3 [CytoView hg19]  LINC00189 - 21q21.3 [CytoView hg38]
Mapping of homologs : NCBILINC00189 [Mapview hg19]  LINC00189 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF490769 BC065252
RefSeq transcript (Entrez)NM_138968
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00189
Cluster EST : UnigeneHs.720711 [ NCBI ]
CGAP (NCI)Hs.720711
Alternative Splicing GalleryENSG00000215533
Gene ExpressionLINC00189 [ NCBI-GEO ]   LINC00189 [ EBI - ARRAY_EXPRESS ]   LINC00189 [ SEEK ]   LINC00189 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00189 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)193629
GTEX Portal (Tissue expression)LINC00189
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00189
DMDM Disease mutations193629
Blocks (Seattle)LINC00189
Human Protein AtlasENSG00000215533
IPIIPI00152485   
Protein Interaction databases
FunCoupENSG00000215533
BioGRIDLINC00189
STRING (EMBL)LINC00189
ZODIACLINC00189
Ontologies - Pathways
Huge Navigator LINC00189 [HugePedia]
snp3D : Map Gene to Disease193629
BioCentury BCIQLINC00189
ClinGenLINC00189
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD193629
Chemical/Pharm GKB GenePA38542
Clinical trialLINC00189
Miscellaneous
canSAR (ICR)LINC00189 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00189
EVEXLINC00189
GoPubMedLINC00189
iHOPLINC00189
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:56:02 CEST 2017

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