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LINC00200 (long intergenic non-protein coding RNA 200)

Identity

Alias_namesC10orf139
NCRNA00200
chromosome 10 open reading frame 139
non-protein coding RNA 200
Alias_symbol (synonym)FLJ40354
Other alias
HGNC (Hugo) LINC00200
LocusID (NCBI) 399706
Atlas_Id 65308
Location 10p15.3  [Link to chromosome band 10p15]
Location_base_pair Starts at 1159824 and ends at 1164672 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00200   30974
Cards
Entrez_Gene (NCBI)LINC00200  399706  long intergenic non-protein coding RNA 200
AliasesC10orf139; NCRNA00200
GeneCards (Weizmann)LINC00200
Ensembl hg19 (Hinxton)ENSG00000229205 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000229205 [Gene_View]  chr10:1159824-1164672 [Contig_View]  LINC00200 [Vega]
ICGC DataPortalENSG00000229205
TCGA cBioPortalLINC00200
AceView (NCBI)LINC00200
Genatlas (Paris)LINC00200
WikiGenes399706
SOURCE (Princeton)LINC00200
Genetics Home Reference (NIH)LINC00200
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00200  -     chr10:1159824-1164672 +  10p15.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00200  -     10p15.3   [Description]    (hg19-Feb_2009)
EnsemblLINC00200 - 10p15.3 [CytoView hg19]  LINC00200 - 10p15.3 [CytoView hg38]
Mapping of homologs : NCBILINC00200 [Mapview hg19]  LINC00200 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097673 BC133038 BC133040
RefSeq transcript (Entrez)NM_001010910
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00200
Cluster EST : UnigeneHs.721191 [ NCBI ]
CGAP (NCI)Hs.721191
Alternative Splicing GalleryENSG00000229205
Gene ExpressionLINC00200 [ NCBI-GEO ]   LINC00200 [ EBI - ARRAY_EXPRESS ]   LINC00200 [ SEEK ]   LINC00200 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00200 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)399706
GTEX Portal (Tissue expression)LINC00200
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00200
DMDM Disease mutations399706
Blocks (Seattle)LINC00200
Human Protein AtlasENSG00000229205
HPRD17990
IPIIPI00975827   
Protein Interaction databases
FunCoupENSG00000229205
BioGRIDLINC00200
STRING (EMBL)LINC00200
ZODIACLINC00200
Ontologies - Pathways
Huge Navigator LINC00200 [HugePedia]
snp3D : Map Gene to Disease399706
BioCentury BCIQLINC00200
ClinGenLINC00200
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD399706
Chemical/Pharm GKB GenePA165548929
Clinical trialLINC00200
Miscellaneous
canSAR (ICR)LINC00200 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00200
EVEXLINC00200
GoPubMedLINC00200
iHOPLINC00200
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:56:02 CEST 2017

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