Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC00202-1 (long intergenic non-protein coding RNA 202-1)

Identity

Alias_namesC10orf51
NCRNA00202
LINC00202
chromosome 10 open reading frame 51
non-protein coding RNA 202
long intergenic non-protein coding RNA 202
Alias_symbol (synonym)bB27G4.1
Other alias
HGNC (Hugo) LINC00202-1
LocusID (NCBI) 387644
Atlas_Id 65309
Location 10p12.1  [Link to chromosome band 10p12]
Location_base_pair Starts at 27220135 and ends at 27230930 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00202-1   24672
Cards
Entrez_Gene (NCBI)LINC00202-1  387644  long intergenic non-protein coding RNA 202-1
AliasesC10orf51; LINC00202; NCRNA00202; bB27G4.1
GeneCards (Weizmann)LINC00202-1
Ensembl hg19 (Hinxton)ENSG00000232224 [Gene_View]  chr10:27220135-27230930 [Contig_View]  LINC00202-1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000232224 [Gene_View]  chr10:27220135-27230930 [Contig_View]  LINC00202-1 [Vega]
ICGC DataPortalENSG00000232224
TCGA cBioPortalLINC00202-1
AceView (NCBI)LINC00202-1
Genatlas (Paris)LINC00202-1
WikiGenes387644
SOURCE (Princeton)LINC00202-1
Genetics Home Reference (NIH)LINC00202-1
Genomic and cartography
GoldenPath hg19 (UCSC)LINC00202-1  -     chr10:27220135-27230930 -  10p12.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC00202-1  -     10p12.1   [Description]    (hg38-Dec_2013)
EnsemblLINC00202-1 - 10p12.1 [CytoView hg19]  LINC00202-1 - 10p12.1 [CytoView hg38]
Mapping of homologs : NCBILINC00202-1 [Mapview hg19]  LINC00202-1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097405 AK128027 BC038408 HG502750 HG502751
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_008705 NW_004929370
Consensus coding sequences : CCDS (NCBI)LINC00202-1
Cluster EST : UnigeneHs.529965 [ NCBI ]
CGAP (NCI)Hs.529965
Alternative Splicing GalleryENSG00000232224
Gene ExpressionLINC00202-1 [ NCBI-GEO ]   LINC00202-1 [ EBI - ARRAY_EXPRESS ]   LINC00202-1 [ SEEK ]   LINC00202-1 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00202-1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)387644
GTEX Portal (Tissue expression)LINC00202-1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00202-1
DMDM Disease mutations387644
Blocks (Seattle)LINC00202-1
Human Protein AtlasENSG00000232224
IPIIPI00868898   
Protein Interaction databases
FunCoupENSG00000232224
BioGRIDLINC00202-1
STRING (EMBL)LINC00202-1
ZODIACLINC00202-1
Ontologies - Pathways
Huge Navigator LINC00202-1 [HugePedia]
snp3D : Map Gene to Disease387644
BioCentury BCIQLINC00202-1
ClinGenLINC00202-1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387644
Chemical/Pharm GKB GenePA165548956
Clinical trialLINC00202-1
Miscellaneous
canSAR (ICR)LINC00202-1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00202-1
EVEXLINC00202-1
GoPubMedLINC00202-1
iHOPLINC00202-1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:11:12 CET 2017

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