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LINC00205 (long intergenic non-protein coding RNA 205)

Identity

Alias_namesC21orf86
NCRNA00205
chromosome 21 open reading frame 86
non-protein coding RNA 205
Other alias
HGNC (Hugo) LINC00205
LocusID (NCBI) 102723489
Atlas_Id 65311
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 46713966 and ends at 46716512 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC00205   16420
Cards
Entrez_Gene (NCBI)LINC00205  102723489  long intergenic non-protein coding RNA 205
AliasesC21orf86; NCRNA00205
GeneCards (Weizmann)LINC00205
Ensembl hg19 (Hinxton) [Gene_View]  chr21:46713966-46716512 [Contig_View]  LINC00205 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr21:46713966-46716512 [Contig_View]  LINC00205 [Vega]
TCGA cBioPortalLINC00205
AceView (NCBI)LINC00205
Genatlas (Paris)LINC00205
WikiGenes102723489
SOURCE (Princeton)LINC00205
Genetics Home Reference (NIH)LINC00205
Genomic and cartography
GoldenPath hg19 (UCSC)LINC00205  -     chr21:46713966-46716512 -  21q22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC00205  -     21q22.3   [Description]    (hg38-Dec_2013)
EnsemblLINC00205 - 21q22.3 [CytoView hg19]  LINC00205 - 21q22.3 [CytoView hg38]
Mapping of homologs : NCBILINC00205 [Mapview hg19]  LINC00205 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF426264 EL950881
RefSeq transcript (Entrez)NM_153454
RefSeq genomic (Entrez)NC_000021 NC_018932 NT_011512 NW_004929427
Consensus coding sequences : CCDS (NCBI)LINC00205
Cluster EST : UnigeneHs.695882 [ NCBI ]
CGAP (NCI)Hs.695882
Gene ExpressionLINC00205 [ NCBI-GEO ]   LINC00205 [ EBI - ARRAY_EXPRESS ]   LINC00205 [ SEEK ]   LINC00205 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00205 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)102723489
GTEX Portal (Tissue expression)LINC00205
Protein : pattern, domain, 3D structure
UniProt/SwissProtP59089   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP59089  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP59089
Splice isoforms : SwissVarP59089
PhosPhoSitePlusP59089
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00205
DMDM Disease mutations102723489
Blocks (Seattle)LINC00205
SuperfamilyP59089
Peptide AtlasP59089
Protein Interaction databases
DIP (DOE-UCLA)P59089
IntAct (EBI)P59089
BioGRIDLINC00205
STRING (EMBL)LINC00205
ZODIACLINC00205
Ontologies - Pathways
QuickGOP59089
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00205
Atlas of Cancer Signalling NetworkLINC00205
Wikipedia pathwaysLINC00205
Orthology - Evolution
OrthoDB102723489
Phylogenetic Trees/Animal Genes : TreeFamLINC00205
HOVERGENP59089
HOGENOMP59089
Homologs : HomoloGeneLINC00205
Homology/Alignments : Family Browser (UCSC)LINC00205
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00205 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00205
dbVarLINC00205
ClinVarLINC00205
1000_GenomesLINC00205 
Exome Variant ServerLINC00205
ExAC (Exome Aggregation Consortium)LINC00205 (select the gene name)
Genetic variants : HAPMAP102723489
Genomic Variants (DGV)LINC00205 [DGVbeta]
DECIPHER (Syndromes)21:46713966-46716512  
CONAN: Copy Number AnalysisLINC00205 
Mutations
ICGC Data PortalLINC00205 
TCGA Data PortalLINC00205 
Broad Tumor PortalLINC00205
OASIS PortalLINC00205 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00205
BioMutasearch LINC00205
DgiDB (Drug Gene Interaction Database)LINC00205
DoCM (Curated mutations)LINC00205 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00205 (select a term)
intoGenLINC00205
Cancer3DLINC00205(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00205
Genetic Testing Registry LINC00205
NextProtP59089 [Medical]
TSGene102723489
GENETestsLINC00205
Huge Navigator LINC00205 [HugePedia]
snp3D : Map Gene to Disease102723489
BioCentury BCIQLINC00205
ClinGenLINC00205
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102723489
Clinical trialLINC00205
Miscellaneous
canSAR (ICR)LINC00205 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00205
EVEXLINC00205
GoPubMedLINC00205
iHOPLINC00205
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:11:13 CET 2017

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