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LINC00208 (long intergenic non-protein coding RNA 208)

Identity

Alias_namesC8orf14
NCRNA00208
chromosome 8 open reading frame 14
non-protein coding RNA 208
Other aliasVIR35
HGNC (Hugo) LINC00208
LocusID (NCBI) 83655
Atlas_Id 65313
Location 8p23.1  [Link to chromosome band 8p23]
Location_base_pair Starts at 11576535 and ends at 11581341 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00208   15535
Cards
Entrez_Gene (NCBI)LINC00208  83655  long intergenic non-protein coding RNA 208
AliasesC8orf14; NCRNA00208; VIR35
GeneCards (Weizmann)LINC00208
Ensembl hg19 (Hinxton)ENSG00000170983 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170983 [Gene_View]  chr8:11576535-11581341 [Contig_View]  LINC00208 [Vega]
ICGC DataPortalENSG00000170983
TCGA cBioPortalLINC00208
AceView (NCBI)LINC00208
Genatlas (Paris)LINC00208
WikiGenes83655
SOURCE (Princeton)LINC00208
Genetics Home Reference (NIH)LINC00208
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00208  -     chr8:11576535-11581341 +  8p23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00208  -     8p23.1   [Description]    (hg19-Feb_2009)
EnsemblLINC00208 - 8p23.1 [CytoView hg19]  LINC00208 - 8p23.1 [CytoView hg38]
Mapping of homologs : NCBILINC00208 [Mapview hg19]  LINC00208 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ291678
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00208
Cluster EST : UnigeneHs.742430 [ NCBI ]
CGAP (NCI)Hs.742430
Alternative Splicing GalleryENSG00000170983
Gene ExpressionLINC00208 [ NCBI-GEO ]   LINC00208 [ EBI - ARRAY_EXPRESS ]   LINC00208 [ SEEK ]   LINC00208 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00208 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83655
GTEX Portal (Tissue expression)LINC00208
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96KT6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96KT6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96KT6
Splice isoforms : SwissVarQ96KT6
PhosPhoSitePlusQ96KT6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00208
DMDM Disease mutations83655
Blocks (Seattle)LINC00208
SuperfamilyQ96KT6
Human Protein AtlasENSG00000170983
Peptide AtlasQ96KT6
IPIIPI00064798   
Protein Interaction databases
DIP (DOE-UCLA)Q96KT6
IntAct (EBI)Q96KT6
FunCoupENSG00000170983
BioGRIDLINC00208
STRING (EMBL)LINC00208
ZODIACLINC00208
Ontologies - Pathways
QuickGOQ96KT6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00208
Atlas of Cancer Signalling NetworkLINC00208
Wikipedia pathwaysLINC00208
Orthology - Evolution
OrthoDB83655
GeneTree (enSembl)ENSG00000170983
Phylogenetic Trees/Animal Genes : TreeFamLINC00208
HOVERGENQ96KT6
HOGENOMQ96KT6
Homologs : HomoloGeneLINC00208
Homology/Alignments : Family Browser (UCSC)LINC00208
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00208 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00208
dbVarLINC00208
ClinVarLINC00208
1000_GenomesLINC00208 
Exome Variant ServerLINC00208
ExAC (Exome Aggregation Consortium)LINC00208 (select the gene name)
Genetic variants : HAPMAP83655
Genomic Variants (DGV)LINC00208 [DGVbeta]
DECIPHERLINC00208 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00208 
Mutations
ICGC Data PortalLINC00208 
TCGA Data PortalLINC00208 
Broad Tumor PortalLINC00208
OASIS PortalLINC00208 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00208
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00208
DgiDB (Drug Gene Interaction Database)LINC00208
DoCM (Curated mutations)LINC00208 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00208 (select a term)
intoGenLINC00208
Cancer3DLINC00208(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00208
Genetic Testing Registry LINC00208
NextProtQ96KT6 [Medical]
TSGene83655
GENETestsLINC00208
Target ValidationLINC00208
Huge Navigator LINC00208 [HugePedia]
snp3D : Map Gene to Disease83655
BioCentury BCIQLINC00208
ClinGenLINC00208
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83655
Chemical/Pharm GKB GenePA25957
Clinical trialLINC00208
Miscellaneous
canSAR (ICR)LINC00208 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00208
EVEXLINC00208
GoPubMedLINC00208
iHOPLINC00208
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:56:03 CEST 2017

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