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LINC00229 (long intergenic non-protein coding RNA 229)

Identity

Alias_namesC22orf10
NCRNA00229
chromosome 22 open reading frame 10
non-protein coding RNA 229
Alias_symbol (synonym)dJ474I12.C22.2
Other alias
HGNC (Hugo) LINC00229
LocusID (NCBI) 414351
Atlas_Id 65320
Location 22q13.31  [Link to chromosome band 22q13]
Location_base_pair Starts at 44606328 and ends at 44625419 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00229   13240
Cards
Entrez_Gene (NCBI)LINC00229  414351  long intergenic non-protein coding RNA 229
AliasesC22orf10; NCRNA00229; dJ474I12.C22.2
GeneCards (Weizmann)LINC00229
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr22:44606328-44625419 [Contig_View]  LINC00229 [Vega]
TCGA cBioPortalLINC00229
AceView (NCBI)LINC00229
Genatlas (Paris)LINC00229
WikiGenes414351
SOURCE (Princeton)LINC00229
Genetics Home Reference (NIH)LINC00229
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00229  -     chr22:44606328-44625419 -  22q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00229  -     22q13.31   [Description]    (hg19-Feb_2009)
EnsemblLINC00229 - 22q13.31 [CytoView hg19]  LINC00229 - 22q13.31 [CytoView hg38]
Mapping of homologs : NCBILINC00229 [Mapview hg19]  LINC00229 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BX090786
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00229
Cluster EST : UnigeneHs.572878 [ NCBI ]
CGAP (NCI)Hs.572878
Gene ExpressionLINC00229 [ NCBI-GEO ]   LINC00229 [ EBI - ARRAY_EXPRESS ]   LINC00229 [ SEEK ]   LINC00229 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00229 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)414351
GTEX Portal (Tissue expression)LINC00229
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00229
DMDM Disease mutations414351
Blocks (Seattle)LINC00229
Protein Interaction databases
BioGRIDLINC00229
STRING (EMBL)LINC00229
ZODIACLINC00229
Ontologies - Pathways
Huge Navigator LINC00229 [HugePedia]
snp3D : Map Gene to Disease414351
BioCentury BCIQLINC00229
ClinGenLINC00229
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD414351
Chemical/Pharm GKB GenePA165378352
Clinical trialLINC00229
Miscellaneous
canSAR (ICR)LINC00229 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00229
EVEXLINC00229
GoPubMedLINC00229
iHOPLINC00229
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:43:48 CET 2017

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