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LINC00235 (long intergenic non-protein coding RNA 235)

Identity

Alias_namesC16orf10
NCRNA00235
chromosome 16 open reading frame 10
non-protein coding RNA 235
Other aliasLA16c-356B8.1
HGNC (Hugo) LINC00235
LocusID (NCBI) 64493
Atlas_Id 65321
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 576847 and ends at 577407 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MGRN1 (16p13.3) / LINC00235 (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00235   14138
Cards
Entrez_Gene (NCBI)LINC00235  64493  long intergenic non-protein coding RNA 235
AliasesC16orf10; LA16c-356B8.1; NCRNA00235
GeneCards (Weizmann)LINC00235
Ensembl hg19 (Hinxton) [Gene_View]  chr16:576847-577407 [Contig_View]  LINC00235 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:576847-577407 [Contig_View]  LINC00235 [Vega]
TCGA cBioPortalLINC00235
AceView (NCBI)LINC00235
Genatlas (Paris)LINC00235
WikiGenes64493
SOURCE (Princeton)LINC00235
Genetics Home Reference (NIH)LINC00235
Genomic and cartography
GoldenPath hg19 (UCSC)LINC00235  -     chr16:576847-577407 -  16p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC00235  -     16p13.3   [Description]    (hg38-Dec_2013)
EnsemblLINC00235 - 16p13.3 [CytoView hg19]  LINC00235 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBILINC00235 [Mapview hg19]  LINC00235 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DA752854 LK938172
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010393 NT_187610 NW_004929400
Consensus coding sequences : CCDS (NCBI)LINC00235
Cluster EST : UnigeneHs.721553 [ NCBI ]
CGAP (NCI)Hs.721553
Gene ExpressionLINC00235 [ NCBI-GEO ]   LINC00235 [ EBI - ARRAY_EXPRESS ]   LINC00235 [ SEEK ]   LINC00235 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00235 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)64493
GTEX Portal (Tissue expression)LINC00235
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00235
DMDM Disease mutations64493
Blocks (Seattle)LINC00235
Protein Interaction databases
BioGRIDLINC00235
STRING (EMBL)LINC00235
ZODIACLINC00235
Ontologies - Pathways
Huge Navigator LINC00235 [HugePedia]
snp3D : Map Gene to Disease64493
BioCentury BCIQLINC00235
ClinGenLINC00235
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64493
Chemical/Pharm GKB GenePA25523
Clinical trialLINC00235
Miscellaneous
canSAR (ICR)LINC00235 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00235
EVEXLINC00235
GoPubMedLINC00235
iHOPLINC00235
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:11:15 CET 2017

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