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LINC00238 (long intergenic non-protein coding RNA 238)

Identity

Alias_namesC14orf53
NCRNA00238
chromosome 14 open reading frame 53
non-protein coding RNA 238
Other alias
HGNC (Hugo) LINC00238
LocusID (NCBI) 440184
Atlas_Id 65322
Location 14q23.3  [Link to chromosome band 14q23]
Location_base_pair Starts at 66953118 and ends at 66965271 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00238   20100
Cards
Entrez_Gene (NCBI)LINC00238  440184  long intergenic non-protein coding RNA 238
AliasesC14orf53; NCRNA00238
GeneCards (Weizmann)LINC00238
Ensembl hg19 (Hinxton)ENSG00000196553 [Gene_View]  chr14:66953118-66965271 [Contig_View]  LINC00238 [Vega]
Ensembl hg38 (Hinxton)ENSG00000196553 [Gene_View]  chr14:66953118-66965271 [Contig_View]  LINC00238 [Vega]
ICGC DataPortalENSG00000196553
TCGA cBioPortalLINC00238
AceView (NCBI)LINC00238
Genatlas (Paris)LINC00238
WikiGenes440184
SOURCE (Princeton)LINC00238
Genetics Home Reference (NIH)LINC00238
Genomic and cartography
GoldenPath hg19 (UCSC)LINC00238  -     chr14:66953118-66965271 +  14q23.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC00238  -     14q23.3   [Description]    (hg38-Dec_2013)
EnsemblLINC00238 - 14q23.3 [CytoView hg19]  LINC00238 - 14q23.3 [CytoView hg38]
Mapping of homologs : NCBILINC00238 [Mapview hg19]  LINC00238 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC033546 BC056671 BC070365 BI829888
RefSeq transcript (Entrez)NM_001004331
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)LINC00238
Cluster EST : UnigeneHs.412138 [ NCBI ]
CGAP (NCI)Hs.412138
Alternative Splicing GalleryENSG00000196553
Gene ExpressionLINC00238 [ NCBI-GEO ]   LINC00238 [ EBI - ARRAY_EXPRESS ]   LINC00238 [ SEEK ]   LINC00238 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00238 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)440184
GTEX Portal (Tissue expression)LINC00238
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00238
DMDM Disease mutations440184
Blocks (Seattle)LINC00238
Human Protein AtlasENSG00000196553
HPRD14708
IPIIPI00419507   
Protein Interaction databases
FunCoupENSG00000196553
BioGRIDLINC00238
STRING (EMBL)LINC00238
ZODIACLINC00238
Ontologies - Pathways
Huge Navigator LINC00238 [HugePedia]
snp3D : Map Gene to Disease440184
BioCentury BCIQLINC00238
ClinGenLINC00238
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440184
Chemical/Pharm GKB GenePA165479209
Clinical trialLINC00238
Miscellaneous
canSAR (ICR)LINC00238 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00238
EVEXLINC00238
GoPubMedLINC00238
iHOPLINC00238
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:11:15 CET 2017

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