Atlas of Genetics and Cytogenetics in Oncology and Haematology

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LINC00240 (long intergenic non-protein coding RNA 240)


Alias (NCBI)C6orf41
HGNC (Hugo) LINC00240
HGNC Alias symbbA373D17.1
HGNC Previous nameC6orf41
HGNC Previous namechromosome 6 open reading frame 41
 non-protein coding RNA 240
LocusID (NCBI) 100133205
Atlas_Id 65324
Location 6p22.2  [Link to chromosome band 6p22]
Location_base_pair Starts at 26956993 and ends at 27023974 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)


Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

HGNC (Hugo)LINC00240   18772
Entrez_Gene (NCBI)LINC00240    long intergenic non-protein coding RNA 240
AliasesC6orf41; NCRNA00240; bA373D17.1
GeneCards (Weizmann)LINC00240
Ensembl hg19 (Hinxton)ENSG00000224843 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000224843 [Gene_View]  ENSG00000224843 [Sequence]  chr6:26956993-27023974 [Contig_View]  LINC00240 [Vega]
ICGC DataPortalENSG00000224843
TCGA cBioPortalLINC00240
AceView (NCBI)LINC00240
Genatlas (Paris)LINC00240
SOURCE (Princeton)LINC00240
Genetics Home Reference (NIH)LINC00240
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00240  -     chr6:26956993-27023974 +  6p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00240  -     6p22.2   [Description]    (hg19-Feb_2009)
GoldenPathLINC00240 - 6p22.2 [CytoView hg19]  LINC00240 - 6p22.2 [CytoView hg38]
genome Data Viewer NCBILINC00240 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AI028608 BC031943 BC044768 BX647648
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00240
Alternative Splicing GalleryENSG00000224843
Gene ExpressionLINC00240 [ NCBI-GEO ]   LINC00240 [ EBI - ARRAY_EXPRESS ]   LINC00240 [ SEEK ]   LINC00240 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00240 [ Firebrowse - Broad ]
GenevisibleExpression of LINC00240 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100133205
GTEX Portal (Tissue expression)LINC00240
Human Protein AtlasENSG00000224843-LINC00240 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00240
Blocks (Seattle)LINC00240
Human Protein Atlas [tissue]ENSG00000224843-LINC00240 [tissue]
Protein Interaction databases
Ontologies - Pathways
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:00:02 CET 2020

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