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LINC00242 (long intergenic non-protein coding RNA 242)

Identity

Alias_namesC6orf122
NCRNA00242
chromosome 6 open reading frame 122
non-protein coding RNA 242
Alias_symbol (synonym)FLJ31451
dJ266L20.5
Other alias
HGNC (Hugo) LINC00242
LocusID (NCBI) 401288
Atlas_Id 65325
Location 6_KI270797v1_alt  [Link to chromosome band 6]
Location_base_pair Starts at 63992 and ends at 74027 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00242   21249
Cards
Entrez_Gene (NCBI)LINC00242  401288  long intergenic non-protein coding RNA 242
AliasesC6orf122; NCRNA00242; dJ266L20.5
GeneCards (Weizmann)LINC00242
Ensembl hg19 (Hinxton)ENSG00000229214 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000229214 [Gene_View]  chr6_KI270797v1_alt:63992-74027 [Contig_View]  LINC00242 [Vega]
ICGC DataPortalENSG00000229214
TCGA cBioPortalLINC00242
AceView (NCBI)LINC00242
Genatlas (Paris)LINC00242
WikiGenes401288
SOURCE (Princeton)LINC00242
Genetics Home Reference (NIH)LINC00242
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00242  -     chr6_KI270797v1_alt:63992-74027 -  6_KI270797v1_alt   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00242  -     6_KI270797v1_alt   [Description]    (hg19-Feb_2009)
EnsemblLINC00242 - 6_KI270797v1_alt [CytoView hg19]  LINC00242 - 6_KI270797v1_alt [CytoView hg38]
Mapping of homologs : NCBILINC00242 [Mapview hg19]  LINC00242 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056013 BC119778 BC122871
RefSeq transcript (Entrez)NM_207502
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_187552
Consensus coding sequences : CCDS (NCBI)LINC00242
Cluster EST : UnigeneHs.556095 [ NCBI ]
CGAP (NCI)Hs.556095
Alternative Splicing GalleryENSG00000229214
Gene ExpressionLINC00242 [ NCBI-GEO ]   LINC00242 [ EBI - ARRAY_EXPRESS ]   LINC00242 [ SEEK ]   LINC00242 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00242 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401288
GTEX Portal (Tissue expression)LINC00242
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T6M2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T6M2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T6M2
Splice isoforms : SwissVarQ5T6M2
PhosPhoSitePlusQ5T6M2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00242
DMDM Disease mutations401288
Blocks (Seattle)LINC00242
SuperfamilyQ5T6M2
Human Protein AtlasENSG00000229214
Peptide AtlasQ5T6M2
HPRD16657
IPIIPI00288983   
Protein Interaction databases
DIP (DOE-UCLA)Q5T6M2
IntAct (EBI)Q5T6M2
FunCoupENSG00000229214
BioGRIDLINC00242
STRING (EMBL)LINC00242
ZODIACLINC00242
Ontologies - Pathways
QuickGOQ5T6M2
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkLINC00242
Atlas of Cancer Signalling NetworkLINC00242
Wikipedia pathwaysLINC00242
Orthology - Evolution
OrthoDB401288
GeneTree (enSembl)ENSG00000229214
Phylogenetic Trees/Animal Genes : TreeFamLINC00242
HOVERGENQ5T6M2
HOGENOMQ5T6M2
Homologs : HomoloGeneLINC00242
Homology/Alignments : Family Browser (UCSC)LINC00242
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00242 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00242
dbVarLINC00242
ClinVarLINC00242
1000_GenomesLINC00242 
Exome Variant ServerLINC00242
ExAC (Exome Aggregation Consortium)LINC00242 (select the gene name)
Genetic variants : HAPMAP401288
Genomic Variants (DGV)LINC00242 [DGVbeta]
DECIPHERLINC00242 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00242 
Mutations
ICGC Data PortalLINC00242 
TCGA Data PortalLINC00242 
Broad Tumor PortalLINC00242
OASIS PortalLINC00242 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00242
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00242
DgiDB (Drug Gene Interaction Database)LINC00242
DoCM (Curated mutations)LINC00242 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00242 (select a term)
intoGenLINC00242
Cancer3DLINC00242(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00242
Genetic Testing Registry LINC00242
NextProtQ5T6M2 [Medical]
TSGene401288
GENETestsLINC00242
Target ValidationLINC00242
Huge Navigator LINC00242 [HugePedia]
snp3D : Map Gene to Disease401288
BioCentury BCIQLINC00242
ClinGenLINC00242
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401288
Chemical/Pharm GKB GenePA165618162
Clinical trialLINC00242
Miscellaneous
canSAR (ICR)LINC00242 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00242
EVEXLINC00242
GoPubMedLINC00242
iHOPLINC00242
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:12:51 CEST 2017

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