Atlas of Genetics and Cytogenetics in Oncology and Haematology

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LINC00254 (long intergenic non-protein coding RNA 254)

Identity

Alias_namesC16orf32
NCRNA00254
chromosome 16 open reading frame 32
non-protein coding RNA 254
Other alias
HGNC (Hugo) LINC00254
LocusID (NCBI) 64735
Atlas_Id 65329
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 1878285 and ends at 1884231 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)LINC00254   14160
Cards
Entrez_Gene (NCBI)LINC00254  64735  long intergenic non-protein coding RNA 254
AliasesC16orf32; NCRNA00254
GeneCards (Weizmann)LINC00254
Ensembl hg19 (Hinxton)ENSG00000162039 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162039 [Gene_View]  chr16:1878285-1884231 [Contig_View]  LINC00254 [Vega]
ICGC DataPortalENSG00000162039
TCGA cBioPortalLINC00254
AceView (NCBI)LINC00254
Genatlas (Paris)LINC00254
WikiGenes64735
SOURCE (Princeton)LINC00254
Genetics Home Reference (NIH)LINC00254
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00254  -     chr16:1878285-1884231 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00254  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblLINC00254 - 16p13.3 [CytoView hg19]  LINC00254 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBILINC00254 [Mapview hg19]  LINC00254 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI209093 AW592188 BE041842
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_187609
Consensus coding sequences : CCDS (NCBI)LINC00254
Cluster EST : UnigeneHs.662737 [ NCBI ]
CGAP (NCI)Hs.662737
Alternative Splicing GalleryENSG00000162039
Gene ExpressionLINC00254 [ NCBI-GEO ]   LINC00254 [ EBI - ARRAY_EXPRESS ]   LINC00254 [ SEEK ]   LINC00254 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00254 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)64735
GTEX Portal (Tissue expression)LINC00254
Human Protein AtlasENSG00000162039-LINC00254 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00254
DMDM Disease mutations64735
Blocks (Seattle)LINC00254
Human Protein Atlas [tissue]ENSG00000162039-LINC00254 [tissue]
Protein Interaction databases
FunCoupENSG00000162039
BioGRIDLINC00254
STRING (EMBL)LINC00254
ZODIACLINC00254
Ontologies - Pathways
Huge Navigator LINC00254 [HugePedia]
snp3D : Map Gene to Disease64735
BioCentury BCIQLINC00254
ClinGenLINC00254
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64735
Chemical/Pharm GKB GenePA25547
Clinical trialLINC00254
Miscellaneous
canSAR (ICR)LINC00254 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00254
EVEXLINC00254
GoPubMedLINC00254
iHOPLINC00254
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Feb 23 18:23:57 CET 2018
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