Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC00261 (long intergenic non-protein coding RNA 261)

Identity

Alias_namesC20orf56
NCRNA00261
chromosome 20 open reading frame 56
non-protein coding RNA 261
Alias_symbol (synonym)bA216C10.1
HCCDR1
TCONS_00027846
ALIEN
DEANR1
onco-lncRNA-17
Other alias
HGNC (Hugo) LINC00261
LocusID (NCBI) 140828
Atlas_Id 65331
Location 20p11.21  [Link to chromosome band 20p11]
Location_base_pair Starts at 22541192 and ends at 22559280 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00261   16189
Cards
Entrez_Gene (NCBI)LINC00261  140828  long intergenic non-protein coding RNA 261
AliasesALIEN; C20orf56; DEANR1; HCCDR1; 
NCRNA00261
GeneCards (Weizmann)LINC00261
Ensembl hg19 (Hinxton)ENSG00000259974 [Gene_View]  chr20:22541192-22559280 [Contig_View]  LINC00261 [Vega]
Ensembl hg38 (Hinxton)ENSG00000259974 [Gene_View]  chr20:22541192-22559280 [Contig_View]  LINC00261 [Vega]
ICGC DataPortalENSG00000259974
TCGA cBioPortalLINC00261
AceView (NCBI)LINC00261
Genatlas (Paris)LINC00261
WikiGenes140828
SOURCE (Princeton)LINC00261
Genetics Home Reference (NIH)LINC00261
Genomic and cartography
GoldenPath hg19 (UCSC)LINC00261  -     chr20:22541192-22559280 -  20p11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC00261  -     20p11.21   [Description]    (hg38-Dec_2013)
EnsemblLINC00261 - 20p11.21 [CytoView hg19]  LINC00261 - 20p11.21 [CytoView hg38]
Mapping of homologs : NCBILINC00261 [Mapview hg19]  LINC00261 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AV648632 BG655894 HG511253 HG511254 HG511255
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011387 NW_004929416
Consensus coding sequences : CCDS (NCBI)LINC00261
Cluster EST : UnigeneHs.9842 [ NCBI ]
CGAP (NCI)Hs.9842
Alternative Splicing GalleryENSG00000259974
Gene ExpressionLINC00261 [ NCBI-GEO ]   LINC00261 [ EBI - ARRAY_EXPRESS ]   LINC00261 [ SEEK ]   LINC00261 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00261 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)140828
GTEX Portal (Tissue expression)LINC00261
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00261
DMDM Disease mutations140828
Blocks (Seattle)LINC00261
Human Protein AtlasENSG00000259974
Protein Interaction databases
FunCoupENSG00000259974
BioGRIDLINC00261
STRING (EMBL)LINC00261
ZODIACLINC00261
Ontologies - Pathways
Huge Navigator LINC00261 [HugePedia]
snp3D : Map Gene to Disease140828
BioCentury BCIQLINC00261
ClinGenLINC00261
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140828
Chemical/Pharm GKB GenePA25766
Clinical trialLINC00261
Miscellaneous
canSAR (ICR)LINC00261 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00261
EVEXLINC00261
GoPubMedLINC00261
iHOPLINC00261
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:11:17 CET 2017

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