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LINC00261 (long intergenic non-protein coding RNA 261)

Identity

Alias (NCBI)ALIEN
C20orf56
DEANR1
FALCOR
HCCDR1
NCRNA00261
TCONS_00027846
onco-lncRNA-17
HGNC (Hugo) LINC00261
HGNC Alias symbbA216C10.1
HCCDR1
TCONS_00027846
ALIEN
DEANR1
onco-lncRNA-17
FALCOR
HGNC Alias namehepatocellular carcinoma down-regulated RNA 1
 definitive endoderm-associated long non-coding RNA 1
 FOXA2-adjacent long noncoding RNA
HGNC Previous nameC20orf56
 NCRNA00261
HGNC Previous namechromosome 20 open reading frame 56
 non-protein coding RNA 261
LocusID (NCBI) 140828
Atlas_Id 57143
Location 20p11.21  [Link to chromosome band 20p11]
Location_base_pair Starts at 22560554 and ends at 22578642 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)LINC00261   16189
Cards
Entrez_Gene (NCBI)LINC00261    long intergenic non-protein coding RNA 261
AliasesALIEN; C20orf56; DEANR1; FALCOR; 
HCCDR1; NCRNA00261; TCONS_00027846; onco-lncRNA-17
GeneCards (Weizmann)LINC00261
Ensembl hg19 (Hinxton)ENSG00000259974 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000259974 [Gene_View]  ENSG00000259974 [Sequence]  chr20:22560554-22578642 [Contig_View]  LINC00261 [Vega]
ICGC DataPortalENSG00000259974
TCGA cBioPortalLINC00261
AceView (NCBI)LINC00261
Genatlas (Paris)LINC00261
SOURCE (Princeton)LINC00261
Genetics Home Reference (NIH)LINC00261
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00261  -     chr20:22560554-22578642 -  20p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00261  -     20p11.21   [Description]    (hg19-Feb_2009)
GoldenPathLINC00261 - 20p11.21 [CytoView hg19]  LINC00261 - 20p11.21 [CytoView hg38]
ImmunoBaseENSG00000259974
Genome Data Viewer NCBILINC00261 [Mapview hg19]  
OMIM618518   
Gene and transcription
Genbank (Entrez)AV648632 BG655894
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00261
Gene ExpressionLINC00261 [ NCBI-GEO ]   LINC00261 [ EBI - ARRAY_EXPRESS ]   LINC00261 [ SEEK ]   LINC00261 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00261 [ Firebrowse - Broad ]
GenevisibleExpression of LINC00261 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140828
GTEX Portal (Tissue expression)LINC00261
Human Protein AtlasENSG00000259974-LINC00261 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00261
Human Protein Atlas [tissue]ENSG00000259974-LINC00261 [tissue]
Protein Interaction databases
BioGRIDLINC00261
STRING (EMBL)LINC00261
ZODIACLINC00261
Ontologies - Pathways
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXLINC00261
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:16:01 CEST 2021

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