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LINC00269 (long intergenic non-protein coding RNA 269)

Identity

Alias_namesCXorf62
NCRNA00269
chromosome X open reading frame 62
non-protein coding RNA 269
Alias_symbol (synonym)FLJ33610
Other alias
HGNC (Hugo) LINC00269
LocusID (NCBI) 100996279
Atlas_Id 65337
Location Xq13.1  [Link to chromosome band Xq13]
Location_base_pair Starts at 69179557 and ends at 69209924 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00269   26586
Cards
Entrez_Gene (NCBI)LINC00269  100996279  long intergenic non-protein coding RNA 269
AliasesCXorf62; NCRNA00269
GeneCards (Weizmann)LINC00269
Ensembl hg19 (Hinxton)ENSG00000215162 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000215162 [Gene_View]  chrX:69179557-69209924 [Contig_View]  LINC00269 [Vega]
ICGC DataPortalENSG00000215162
TCGA cBioPortalLINC00269
AceView (NCBI)LINC00269
Genatlas (Paris)LINC00269
WikiGenes100996279
SOURCE (Princeton)LINC00269
Genetics Home Reference (NIH)LINC00269
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00269  -     chrX:69179557-69209924 +  Xq13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00269  -     Xq13.1   [Description]    (hg19-Feb_2009)
EnsemblLINC00269 - Xq13.1 [CytoView hg19]  LINC00269 - Xq13.1 [CytoView hg38]
Mapping of homologs : NCBILINC00269 [Mapview hg19]  LINC00269 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK090929
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00269
Alternative Splicing GalleryENSG00000215162
Gene ExpressionLINC00269 [ NCBI-GEO ]   LINC00269 [ EBI - ARRAY_EXPRESS ]   LINC00269 [ SEEK ]   LINC00269 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00269 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100996279
GTEX Portal (Tissue expression)LINC00269
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N2A0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N2A0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N2A0
Splice isoforms : SwissVarQ8N2A0
PhosPhoSitePlusQ8N2A0
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00269
DMDM Disease mutations100996279
Blocks (Seattle)LINC00269
SuperfamilyQ8N2A0
Human Protein AtlasENSG00000215162
Peptide AtlasQ8N2A0
Protein Interaction databases
DIP (DOE-UCLA)Q8N2A0
IntAct (EBI)Q8N2A0
FunCoupENSG00000215162
BioGRIDLINC00269
STRING (EMBL)LINC00269
ZODIACLINC00269
Ontologies - Pathways
QuickGOQ8N2A0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00269
Atlas of Cancer Signalling NetworkLINC00269
Wikipedia pathwaysLINC00269
Orthology - Evolution
OrthoDB100996279
GeneTree (enSembl)ENSG00000215162
Phylogenetic Trees/Animal Genes : TreeFamLINC00269
HOVERGENQ8N2A0
HOGENOMQ8N2A0
Homologs : HomoloGeneLINC00269
Homology/Alignments : Family Browser (UCSC)LINC00269
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00269 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00269
dbVarLINC00269
ClinVarLINC00269
1000_GenomesLINC00269 
Exome Variant ServerLINC00269
ExAC (Exome Aggregation Consortium)LINC00269 (select the gene name)
Genetic variants : HAPMAP100996279
Genomic Variants (DGV)LINC00269 [DGVbeta]
DECIPHERLINC00269 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00269 
Mutations
ICGC Data PortalLINC00269 
TCGA Data PortalLINC00269 
Broad Tumor PortalLINC00269
OASIS PortalLINC00269 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00269
BioMutasearch LINC00269
DgiDB (Drug Gene Interaction Database)LINC00269
DoCM (Curated mutations)LINC00269 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00269 (select a term)
intoGenLINC00269
Cancer3DLINC00269(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00269
Genetic Testing Registry LINC00269
NextProtQ8N2A0 [Medical]
TSGene100996279
GENETestsLINC00269
Target ValidationLINC00269
Huge Navigator LINC00269 [HugePedia]
snp3D : Map Gene to Disease100996279
BioCentury BCIQLINC00269
ClinGenLINC00269
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100996279
Clinical trialLINC00269
Miscellaneous
canSAR (ICR)LINC00269 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00269
EVEXLINC00269
GoPubMedLINC00269
iHOPLINC00269
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:12:53 CEST 2017

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