Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC00271 (long intergenic non-protein coding RNA 271)

Identity

Alias_namesC6orf217
NCRNA00271
chromosome 6 open reading frame 217
non-protein coding RNA 271
Other alias
HGNC (Hugo) LINC00271
LocusID (NCBI) 100131814
Atlas_Id 65338
Location 6q23.3  [Link to chromosome band 6q23]
Location_base_pair Starts at 135818939 and ends at 136011976 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00271   32526
Cards
Entrez_Gene (NCBI)LINC00271  100131814  long intergenic non-protein coding RNA 271
AliasesC6orf217; NCRNA00271
GeneCards (Weizmann)LINC00271
Ensembl hg19 (Hinxton)ENSG00000231028 [Gene_View]  chr6:135818939-136011976 [Contig_View]  LINC00271 [Vega]
Ensembl hg38 (Hinxton)ENSG00000231028 [Gene_View]  chr6:135818939-136011976 [Contig_View]  LINC00271 [Vega]
ICGC DataPortalENSG00000231028
TCGA cBioPortalLINC00271
AceView (NCBI)LINC00271
Genatlas (Paris)LINC00271
WikiGenes100131814
SOURCE (Princeton)LINC00271
Genetics Home Reference (NIH)LINC00271
Genomic and cartography
GoldenPath hg19 (UCSC)LINC00271  -     chr6:135818939-136011976 +  6q23.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC00271  -     6q23.3   [Description]    (hg38-Dec_2013)
EnsemblLINC00271 - 6q23.3 [CytoView hg19]  LINC00271 - 6q23.3 [CytoView hg38]
Mapping of homologs : NCBILINC00271 [Mapview hg19]  LINC00271 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ606314 AJ606326 BC040979 BC127000 BC127001
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_025741 NW_004929328
Consensus coding sequences : CCDS (NCBI)LINC00271
Cluster EST : UnigeneHs.734007 [ NCBI ]
CGAP (NCI)Hs.734007
Alternative Splicing GalleryENSG00000231028
Gene ExpressionLINC00271 [ NCBI-GEO ]   LINC00271 [ EBI - ARRAY_EXPRESS ]   LINC00271 [ SEEK ]   LINC00271 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00271 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100131814
GTEX Portal (Tissue expression)LINC00271
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C7V0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C7V0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C7V0
Splice isoforms : SwissVarP0C7V0
PhosPhoSitePlusP0C7V0
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00271
DMDM Disease mutations100131814
Blocks (Seattle)LINC00271
SuperfamilyP0C7V0
Human Protein AtlasENSG00000231028
Peptide AtlasP0C7V0
IPIIPI00900279   
Protein Interaction databases
DIP (DOE-UCLA)P0C7V0
IntAct (EBI)P0C7V0
FunCoupENSG00000231028
BioGRIDLINC00271
STRING (EMBL)LINC00271
ZODIACLINC00271
Ontologies - Pathways
QuickGOP0C7V0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00271
Atlas of Cancer Signalling NetworkLINC00271
Wikipedia pathwaysLINC00271
Orthology - Evolution
OrthoDB100131814
GeneTree (enSembl)ENSG00000231028
Phylogenetic Trees/Animal Genes : TreeFamLINC00271
HOVERGENP0C7V0
HOGENOMP0C7V0
Homologs : HomoloGeneLINC00271
Homology/Alignments : Family Browser (UCSC)LINC00271
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00271 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00271
dbVarLINC00271
ClinVarLINC00271
1000_GenomesLINC00271 
Exome Variant ServerLINC00271
ExAC (Exome Aggregation Consortium)LINC00271 (select the gene name)
Genetic variants : HAPMAP100131814
Genomic Variants (DGV)LINC00271 [DGVbeta]
DECIPHER (Syndromes)6:135818939-136011976  ENSG00000231028
CONAN: Copy Number AnalysisLINC00271 
Mutations
ICGC Data PortalLINC00271 
TCGA Data PortalLINC00271 
Broad Tumor PortalLINC00271
OASIS PortalLINC00271 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00271
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00271
DgiDB (Drug Gene Interaction Database)LINC00271
DoCM (Curated mutations)LINC00271 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00271 (select a term)
intoGenLINC00271
Cancer3DLINC00271(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00271
Genetic Testing Registry LINC00271
NextProtP0C7V0 [Medical]
TSGene100131814
GENETestsLINC00271
Huge Navigator LINC00271 [HugePedia]
snp3D : Map Gene to Disease100131814
BioCentury BCIQLINC00271
ClinGenLINC00271
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100131814
Chemical/Pharm GKB GenePA165618181
Clinical trialLINC00271
Miscellaneous
canSAR (ICR)LINC00271 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00271
EVEXLINC00271
GoPubMedLINC00271
iHOPLINC00271
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:11:19 CET 2017

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