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LINC00290 (long intergenic non-protein coding RNA 290)

Identity

Alias_namesNCRNA00290
non-protein coding RNA 290
Other alias
HGNC (Hugo) LINC00290
LocusID (NCBI) 728081
Atlas_Id 65346
Location 4q34.3  [Link to chromosome band 4q34]
Location_base_pair Starts at 181064090 and ends at 181159149 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LINC00290 (4q34.3) / LRRC61 (7q36.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00290   38515
Cards
Entrez_Gene (NCBI)LINC00290  728081  long intergenic non-protein coding RNA 290
AliasesNCRNA00290
GeneCards (Weizmann)LINC00290
Ensembl hg19 (Hinxton)ENSG00000248197 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000248197 [Gene_View]  chr4:181064090-181159149 [Contig_View]  LINC00290 [Vega]
ICGC DataPortalENSG00000248197
TCGA cBioPortalLINC00290
AceView (NCBI)LINC00290
Genatlas (Paris)LINC00290
WikiGenes728081
SOURCE (Princeton)LINC00290
Genetics Home Reference (NIH)LINC00290
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00290  -     chr4:181064090-181159149 -  4q34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00290  -     4q34.3   [Description]    (hg19-Feb_2009)
EnsemblLINC00290 - 4q34.3 [CytoView hg19]  LINC00290 - 4q34.3 [CytoView hg38]
Mapping of homologs : NCBILINC00290 [Mapview hg19]  LINC00290 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF088005
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00290
Cluster EST : UnigeneHs.535735 [ NCBI ]
CGAP (NCI)Hs.535735
Alternative Splicing GalleryENSG00000248197
Gene ExpressionLINC00290 [ NCBI-GEO ]   LINC00290 [ EBI - ARRAY_EXPRESS ]   LINC00290 [ SEEK ]   LINC00290 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00290 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)728081
GTEX Portal (Tissue expression)LINC00290
Human Protein AtlasENSG00000248197-LINC00290 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00290
DMDM Disease mutations728081
Blocks (Seattle)LINC00290
Human Protein Atlas [tissue]ENSG00000248197-LINC00290 [tissue]
Protein Interaction databases
FunCoupENSG00000248197
BioGRIDLINC00290
STRING (EMBL)LINC00290
ZODIACLINC00290
Ontologies - Pathways
Huge Navigator LINC00290 [HugePedia]
snp3D : Map Gene to Disease728081
BioCentury BCIQLINC00290
ClinGenLINC00290
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728081
Clinical trialLINC00290
Miscellaneous
canSAR (ICR)LINC00290 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00290
EVEXLINC00290
GoPubMedLINC00290
iHOPLINC00290
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:10:05 CET 2017

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