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LINC00299 (long intergenic non-protein coding RNA 299)

Identity

Alias_namesC2orf46
NCRNA00299
chromosome 2 open reading frame 46
non-protein coding RNA 299
Alias_symbol (synonym)FLJ45673
Other alias
HGNC (Hugo) LINC00299
LocusID (NCBI) 339789
Atlas_Id 65351
Location 2p25.1  [Link to chromosome band 2p25]
Location_base_pair Starts at 8207143 and ends at 8328419 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00299   27940
Cards
Entrez_Gene (NCBI)LINC00299  339789  long intergenic non-protein coding RNA 299
AliasesC2orf46; NCRNA00299
GeneCards (Weizmann)LINC00299
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:8207143-8328419 [Contig_View]  LINC00299 [Vega]
TCGA cBioPortalLINC00299
AceView (NCBI)LINC00299
Genatlas (Paris)LINC00299
WikiGenes339789
SOURCE (Princeton)LINC00299
Genetics Home Reference (NIH)LINC00299
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00299  -     chr2:8207143-8328419 -  2p25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00299  -     2p25.1   [Description]    (hg19-Feb_2009)
EnsemblLINC00299 - 2p25.1 [CytoView hg19]  LINC00299 - 2p25.1 [CytoView hg38]
Mapping of homologs : NCBILINC00299 [Mapview hg19]  LINC00299 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK127578 BC043563
RefSeq transcript (Entrez)NM_207358
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00299
Cluster EST : UnigeneHs.565619 [ NCBI ]
CGAP (NCI)Hs.565619
Gene ExpressionLINC00299 [ NCBI-GEO ]   LINC00299 [ EBI - ARRAY_EXPRESS ]   LINC00299 [ SEEK ]   LINC00299 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00299 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339789
GTEX Portal (Tissue expression)LINC00299
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZSB3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZSB3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZSB3
Splice isoforms : SwissVarQ6ZSB3
PhosPhoSitePlusQ6ZSB3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00299
DMDM Disease mutations339789
Blocks (Seattle)LINC00299
SuperfamilyQ6ZSB3
Peptide AtlasQ6ZSB3
IPIIPI00400903   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZSB3
IntAct (EBI)Q6ZSB3
BioGRIDLINC00299
STRING (EMBL)LINC00299
ZODIACLINC00299
Ontologies - Pathways
QuickGOQ6ZSB3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00299
Atlas of Cancer Signalling NetworkLINC00299
Wikipedia pathwaysLINC00299
Orthology - Evolution
OrthoDB339789
Phylogenetic Trees/Animal Genes : TreeFamLINC00299
HOVERGENQ6ZSB3
HOGENOMQ6ZSB3
Homologs : HomoloGeneLINC00299
Homology/Alignments : Family Browser (UCSC)LINC00299
Gene fusions - Rearrangements
Tumor Fusion PortalLINC00299
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00299 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00299
dbVarLINC00299
ClinVarLINC00299
1000_GenomesLINC00299 
Exome Variant ServerLINC00299
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP339789
Genomic Variants (DGV)LINC00299 [DGVbeta]
DECIPHERLINC00299 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00299 
Mutations
ICGC Data PortalLINC00299 
TCGA Data PortalLINC00299 
Broad Tumor PortalLINC00299
OASIS PortalLINC00299 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00299
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00299
DgiDB (Drug Gene Interaction Database)LINC00299
DoCM (Curated mutations)LINC00299 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00299 (select a term)
intoGenLINC00299
Cancer3DLINC00299(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLINC00299
MedgenLINC00299
Genetic Testing Registry LINC00299
NextProtQ6ZSB3 [Medical]
TSGene339789
GENETestsLINC00299
Target ValidationLINC00299
Huge Navigator LINC00299 [HugePedia]
snp3D : Map Gene to Disease339789
BioCentury BCIQLINC00299
ClinGenLINC00299
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339789
Chemical/Pharm GKB GenePA165696372
Clinical trialLINC00299
Miscellaneous
canSAR (ICR)LINC00299 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00299
EVEXLINC00299
GoPubMedLINC00299
iHOPLINC00299
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:04:52 CET 2017

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