Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC00301 (long intergenic non-protein coding RNA 301)

Identity

Alias_namesC11orf64
NCRNA00301
chromosome 11 open reading frame 64
non-protein coding RNA 301
Alias_symbol (synonym)MGC39681
Other alias
HGNC (Hugo) LINC00301
LocusID (NCBI) 283197
Atlas_Id 65352
Location 11q12.2  [Link to chromosome band 11q12]
Location_base_pair Starts at 60383224 and ends at 60454619 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00301   28603
Cards
Entrez_Gene (NCBI)LINC00301  283197  long intergenic non-protein coding RNA 301
AliasesC11orf64; NCRNA00301
GeneCards (Weizmann)LINC00301
Ensembl hg19 (Hinxton)ENSG00000181995 [Gene_View]  chr11:60383224-60454619 [Contig_View]  LINC00301 [Vega]
Ensembl hg38 (Hinxton)ENSG00000181995 [Gene_View]  chr11:60383224-60454619 [Contig_View]  LINC00301 [Vega]
ICGC DataPortalENSG00000181995
TCGA cBioPortalLINC00301
AceView (NCBI)LINC00301
Genatlas (Paris)LINC00301
WikiGenes283197
SOURCE (Princeton)LINC00301
Genetics Home Reference (NIH)LINC00301
Genomic and cartography
GoldenPath hg19 (UCSC)LINC00301  -     chr11:60383224-60454619 +  11q12.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC00301  -     11q12.2   [Description]    (hg38-Dec_2013)
EnsemblLINC00301 - 11q12.2 [CytoView hg19]  LINC00301 - 11q12.2 [CytoView hg38]
Mapping of homologs : NCBILINC00301 [Mapview hg19]  LINC00301 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK058123 BC029583 BX103095 DQ891492 DQ894683
RefSeq transcript (Entrez)NM_174939
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)LINC00301
Cluster EST : UnigeneHs.372650 [ NCBI ]
CGAP (NCI)Hs.372650
Alternative Splicing GalleryENSG00000181995
Gene ExpressionLINC00301 [ NCBI-GEO ]   LINC00301 [ EBI - ARRAY_EXPRESS ]   LINC00301 [ SEEK ]   LINC00301 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00301 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283197
GTEX Portal (Tissue expression)LINC00301
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NCQ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NCQ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NCQ3
Splice isoforms : SwissVarQ8NCQ3
PhosPhoSitePlusQ8NCQ3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00301
DMDM Disease mutations283197
Blocks (Seattle)LINC00301
SuperfamilyQ8NCQ3
Human Protein AtlasENSG00000181995
Peptide AtlasQ8NCQ3
HPRD17544
IPIIPI00168418   
Protein Interaction databases
DIP (DOE-UCLA)Q8NCQ3
IntAct (EBI)Q8NCQ3
FunCoupENSG00000181995
BioGRIDLINC00301
STRING (EMBL)LINC00301
ZODIACLINC00301
Ontologies - Pathways
QuickGOQ8NCQ3
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkLINC00301
Atlas of Cancer Signalling NetworkLINC00301
Wikipedia pathwaysLINC00301
Orthology - Evolution
OrthoDB283197
GeneTree (enSembl)ENSG00000181995
Phylogenetic Trees/Animal Genes : TreeFamLINC00301
HOVERGENQ8NCQ3
HOGENOMQ8NCQ3
Homologs : HomoloGeneLINC00301
Homology/Alignments : Family Browser (UCSC)LINC00301
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00301 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00301
dbVarLINC00301
ClinVarLINC00301
1000_GenomesLINC00301 
Exome Variant ServerLINC00301
ExAC (Exome Aggregation Consortium)LINC00301 (select the gene name)
Genetic variants : HAPMAP283197
Genomic Variants (DGV)LINC00301 [DGVbeta]
DECIPHER (Syndromes)11:60383224-60454619  ENSG00000181995
CONAN: Copy Number AnalysisLINC00301 
Mutations
ICGC Data PortalLINC00301 
TCGA Data PortalLINC00301 
Broad Tumor PortalLINC00301
OASIS PortalLINC00301 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00301
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00301
DgiDB (Drug Gene Interaction Database)LINC00301
DoCM (Curated mutations)LINC00301 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00301 (select a term)
intoGenLINC00301
Cancer3DLINC00301(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00301
Genetic Testing Registry LINC00301
NextProtQ8NCQ3 [Medical]
TSGene283197
GENETestsLINC00301
Huge Navigator LINC00301 [HugePedia]
snp3D : Map Gene to Disease283197
BioCentury BCIQLINC00301
ClinGenLINC00301
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283197
Chemical/Pharm GKB GenePA144596483
Clinical trialLINC00301
Miscellaneous
canSAR (ICR)LINC00301 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00301
EVEXLINC00301
GoPubMedLINC00301
iHOPLINC00301
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:11:22 CET 2017

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