Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC00303 (long intergenic non-protein coding RNA 303)

Identity

Alias_namesC1orf157
NCRNA00303
chromosome 1 open reading frame 157
non-protein coding RNA 303
Alias_symbol (synonym)FLJ40343
Other alias
HGNC (Hugo) LINC00303
LocusID (NCBI) 284573
Atlas_Id 65354
Location 1q32.1  [Link to chromosome band 1q32]
Location_base_pair Starts at 204001575 and ends at 204010392 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00303   26865
Cards
Entrez_Gene (NCBI)LINC00303  284573  long intergenic non-protein coding RNA 303
AliasesC1orf157; NCRNA00303
GeneCards (Weizmann)LINC00303
Ensembl hg19 (Hinxton)ENSG00000176754 [Gene_View]  chr1:204001575-204010392 [Contig_View]  LINC00303 [Vega]
Ensembl hg38 (Hinxton)ENSG00000176754 [Gene_View]  chr1:204001575-204010392 [Contig_View]  LINC00303 [Vega]
ICGC DataPortalENSG00000176754
TCGA cBioPortalLINC00303
AceView (NCBI)LINC00303
Genatlas (Paris)LINC00303
WikiGenes284573
SOURCE (Princeton)LINC00303
Genetics Home Reference (NIH)LINC00303
Genomic and cartography
GoldenPath hg19 (UCSC)LINC00303  -     chr1:204001575-204010392 -  1q32.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC00303  -     1q32.1   [Description]    (hg38-Dec_2013)
EnsemblLINC00303 - 1q32.1 [CytoView hg19]  LINC00303 - 1q32.1 [CytoView hg38]
Mapping of homologs : NCBILINC00303 [Mapview hg19]  LINC00303 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097662 BC104010 BC104011 BC104012 HG493097
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)LINC00303
Cluster EST : UnigeneHs.406979 [ NCBI ]
CGAP (NCI)Hs.406979
Alternative Splicing GalleryENSG00000176754
Gene ExpressionLINC00303 [ NCBI-GEO ]   LINC00303 [ EBI - ARRAY_EXPRESS ]   LINC00303 [ SEEK ]   LINC00303 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00303 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284573
GTEX Portal (Tissue expression)LINC00303
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3SY05   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3SY05  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3SY05
Splice isoforms : SwissVarQ3SY05
PhosPhoSitePlusQ3SY05
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00303
DMDM Disease mutations284573
Blocks (Seattle)LINC00303
SuperfamilyQ3SY05
Human Protein AtlasENSG00000176754
Peptide AtlasQ3SY05
HPRD08279
IPIIPI00784099   IPI00167322   
Protein Interaction databases
DIP (DOE-UCLA)Q3SY05
IntAct (EBI)Q3SY05
FunCoupENSG00000176754
BioGRIDLINC00303
STRING (EMBL)LINC00303
ZODIACLINC00303
Ontologies - Pathways
QuickGOQ3SY05
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00303
Atlas of Cancer Signalling NetworkLINC00303
Wikipedia pathwaysLINC00303
Orthology - Evolution
OrthoDB284573
GeneTree (enSembl)ENSG00000176754
Phylogenetic Trees/Animal Genes : TreeFamLINC00303
HOVERGENQ3SY05
HOGENOMQ3SY05
Homologs : HomoloGeneLINC00303
Homology/Alignments : Family Browser (UCSC)LINC00303
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00303 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00303
dbVarLINC00303
ClinVarLINC00303
1000_GenomesLINC00303 
Exome Variant ServerLINC00303
ExAC (Exome Aggregation Consortium)LINC00303 (select the gene name)
Genetic variants : HAPMAP284573
Genomic Variants (DGV)LINC00303 [DGVbeta]
DECIPHER (Syndromes)1:204001575-204010392  ENSG00000176754
CONAN: Copy Number AnalysisLINC00303 
Mutations
ICGC Data PortalLINC00303 
TCGA Data PortalLINC00303 
Broad Tumor PortalLINC00303
OASIS PortalLINC00303 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00303
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00303
DgiDB (Drug Gene Interaction Database)LINC00303
DoCM (Curated mutations)LINC00303 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00303 (select a term)
intoGenLINC00303
Cancer3DLINC00303(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00303
Genetic Testing Registry LINC00303
NextProtQ3SY05 [Medical]
TSGene284573
GENETestsLINC00303
Huge Navigator LINC00303 [HugePedia]
snp3D : Map Gene to Disease284573
BioCentury BCIQLINC00303
ClinGenLINC00303
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284573
Chemical/Pharm GKB GenePA142672408
Clinical trialLINC00303
Miscellaneous
canSAR (ICR)LINC00303 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00303
EVEXLINC00303
GoPubMedLINC00303
iHOPLINC00303
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:11:22 CET 2017

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