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LINC00304 (long intergenic non-protein coding RNA 304)

Identity

Alias_namesC16orf81
NCRNA00304
chromosome 16 open reading frame 81
non-protein coding RNA 304
Alias_symbol (synonym)FLJ36701
Other alias
HGNC (Hugo) LINC00304
LocusID (NCBI) 283860
Atlas_Id 65355
Location 16q24.3  [Link to chromosome band 16q24]
Location_base_pair Starts at 89159220 and ends at 89163675 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00304   26713
Cards
Entrez_Gene (NCBI)LINC00304  283860  long intergenic non-protein coding RNA 304
AliasesC16orf81; NCRNA00304
GeneCards (Weizmann)LINC00304
Ensembl hg19 (Hinxton)ENSG00000180422 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180422 [Gene_View]  chr16:89159220-89163675 [Contig_View]  LINC00304 [Vega]
ICGC DataPortalENSG00000180422
TCGA cBioPortalLINC00304
AceView (NCBI)LINC00304
Genatlas (Paris)LINC00304
WikiGenes283860
SOURCE (Princeton)LINC00304
Genetics Home Reference (NIH)LINC00304
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00304  -     chr16:89159220-89163675 +  16q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00304  -     16q24.3   [Description]    (hg19-Feb_2009)
EnsemblLINC00304 - 16q24.3 [CytoView hg19]  LINC00304 - 16q24.3 [CytoView hg38]
Mapping of homologs : NCBILINC00304 [Mapview hg19]  LINC00304 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK094020 AK308636
RefSeq transcript (Entrez)NM_173617
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00304
Cluster EST : UnigeneHs.739138 [ NCBI ]
CGAP (NCI)Hs.739138
Alternative Splicing GalleryENSG00000180422
Gene ExpressionLINC00304 [ NCBI-GEO ]   LINC00304 [ EBI - ARRAY_EXPRESS ]   LINC00304 [ SEEK ]   LINC00304 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00304 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283860
GTEX Portal (Tissue expression)LINC00304
Human Protein AtlasENSG00000180422-LINC00304 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N9R0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N9R0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N9R0
Splice isoforms : SwissVarQ8N9R0
PhosPhoSitePlusQ8N9R0
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00304
DMDM Disease mutations283860
Blocks (Seattle)LINC00304
SuperfamilyQ8N9R0
Human Protein Atlas [tissue]ENSG00000180422-LINC00304 [tissue]
Peptide AtlasQ8N9R0
HPRD08209
IPIIPI00167788   
Protein Interaction databases
DIP (DOE-UCLA)Q8N9R0
IntAct (EBI)Q8N9R0
FunCoupENSG00000180422
BioGRIDLINC00304
STRING (EMBL)LINC00304
ZODIACLINC00304
Ontologies - Pathways
QuickGOQ8N9R0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00304
Atlas of Cancer Signalling NetworkLINC00304
Wikipedia pathwaysLINC00304
Orthology - Evolution
OrthoDB283860
GeneTree (enSembl)ENSG00000180422
Phylogenetic Trees/Animal Genes : TreeFamLINC00304
HOVERGENQ8N9R0
HOGENOMQ8N9R0
Homologs : HomoloGeneLINC00304
Homology/Alignments : Family Browser (UCSC)LINC00304
Gene fusions - Rearrangements
Tumor Fusion PortalLINC00304
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00304 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00304
dbVarLINC00304
ClinVarLINC00304
1000_GenomesLINC00304 
Exome Variant ServerLINC00304
ExAC (Exome Aggregation Consortium)ENSG00000180422
GNOMAD BrowserENSG00000180422
Genetic variants : HAPMAP283860
Genomic Variants (DGV)LINC00304 [DGVbeta]
DECIPHERLINC00304 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00304 
Mutations
ICGC Data PortalLINC00304 
TCGA Data PortalLINC00304 
Broad Tumor PortalLINC00304
OASIS PortalLINC00304 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00304
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00304
DgiDB (Drug Gene Interaction Database)LINC00304
DoCM (Curated mutations)LINC00304 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00304 (select a term)
intoGenLINC00304
Cancer3DLINC00304(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLINC00304
MedgenLINC00304
Genetic Testing Registry LINC00304
NextProtQ8N9R0 [Medical]
TSGene283860
GENETestsLINC00304
Target ValidationLINC00304
Huge Navigator LINC00304 [HugePedia]
snp3D : Map Gene to Disease283860
BioCentury BCIQLINC00304
ClinGenLINC00304
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283860
Chemical/Pharm GKB GenePA162378401
Clinical trialLINC00304
Miscellaneous
canSAR (ICR)LINC00304 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00304
EVEXLINC00304
GoPubMedLINC00304
iHOPLINC00304
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:33:26 CET 2017

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