Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC00305 (long intergenic non-protein coding RNA 305)

Identity

Alias_namesC18orf20
NCRNA00305
chromosome 18 open reading frame 20
non-protein coding RNA 305
Alias_symbol (synonym)MGC39571
HsT1235
Other alias
HGNC (Hugo) LINC00305
LocusID (NCBI) 221241
Atlas_Id 65356
Location 18q22.1  [Link to chromosome band 18q22]
Location_base_pair Starts at 61747536 and ends at 61765844 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00305   28597
Cards
Entrez_Gene (NCBI)LINC00305  221241  long intergenic non-protein coding RNA 305
AliasesC18orf20; HsT1235; NCRNA00305
GeneCards (Weizmann)LINC00305
Ensembl hg19 (Hinxton)ENSG00000179676 [Gene_View]  chr18:61747536-61765844 [Contig_View]  LINC00305 [Vega]
Ensembl hg38 (Hinxton)ENSG00000179676 [Gene_View]  chr18:61747536-61765844 [Contig_View]  LINC00305 [Vega]
ICGC DataPortalENSG00000179676
TCGA cBioPortalLINC00305
AceView (NCBI)LINC00305
Genatlas (Paris)LINC00305
WikiGenes221241
SOURCE (Princeton)LINC00305
Genetics Home Reference (NIH)LINC00305
Genomic and cartography
GoldenPath hg19 (UCSC)LINC00305  -     chr18:61747536-61765844 -  18q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC00305  -     18q22.1   [Description]    (hg38-Dec_2013)
EnsemblLINC00305 - 18q22.1 [CytoView hg19]  LINC00305 - 18q22.1 [CytoView hg38]
Mapping of homologs : NCBILINC00305 [Mapview hg19]  LINC00305 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY336744 BC029565 EU176291 EU176611 HG510095
RefSeq transcript (Entrez)NM_152728
RefSeq genomic (Entrez)NC_000018 NC_018929 NT_010966 NW_004929411
Consensus coding sequences : CCDS (NCBI)LINC00305
Cluster EST : UnigeneHs.567778 [ NCBI ]
CGAP (NCI)Hs.567778
Alternative Splicing GalleryENSG00000179676
Gene ExpressionLINC00305 [ NCBI-GEO ]   LINC00305 [ EBI - ARRAY_EXPRESS ]   LINC00305 [ SEEK ]   LINC00305 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00305 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221241
GTEX Portal (Tissue expression)LINC00305
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z4B0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z4B0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z4B0
Splice isoforms : SwissVarQ7Z4B0
PhosPhoSitePlusQ7Z4B0
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00305
DMDM Disease mutations221241
Blocks (Seattle)LINC00305
SuperfamilyQ7Z4B0
Human Protein AtlasENSG00000179676
Peptide AtlasQ7Z4B0
HPRD16624
IPIIPI00169301   IPI00607736   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z4B0
IntAct (EBI)Q7Z4B0
FunCoupENSG00000179676
BioGRIDLINC00305
STRING (EMBL)LINC00305
ZODIACLINC00305
Ontologies - Pathways
QuickGOQ7Z4B0
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkLINC00305
Atlas of Cancer Signalling NetworkLINC00305
Wikipedia pathwaysLINC00305
Orthology - Evolution
OrthoDB221241
GeneTree (enSembl)ENSG00000179676
Phylogenetic Trees/Animal Genes : TreeFamLINC00305
HOVERGENQ7Z4B0
HOGENOMQ7Z4B0
Homologs : HomoloGeneLINC00305
Homology/Alignments : Family Browser (UCSC)LINC00305
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00305 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00305
dbVarLINC00305
ClinVarLINC00305
1000_GenomesLINC00305 
Exome Variant ServerLINC00305
ExAC (Exome Aggregation Consortium)LINC00305 (select the gene name)
Genetic variants : HAPMAP221241
Genomic Variants (DGV)LINC00305 [DGVbeta]
DECIPHER (Syndromes)18:61747536-61765844  ENSG00000179676
CONAN: Copy Number AnalysisLINC00305 
Mutations
ICGC Data PortalLINC00305 
TCGA Data PortalLINC00305 
Broad Tumor PortalLINC00305
OASIS PortalLINC00305 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00305
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00305
DgiDB (Drug Gene Interaction Database)LINC00305
DoCM (Curated mutations)LINC00305 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00305 (select a term)
intoGenLINC00305
Cancer3DLINC00305(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00305
Genetic Testing Registry LINC00305
NextProtQ7Z4B0 [Medical]
TSGene221241
GENETestsLINC00305
Huge Navigator LINC00305 [HugePedia]
snp3D : Map Gene to Disease221241
BioCentury BCIQLINC00305
ClinGenLINC00305
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221241
Chemical/Pharm GKB GenePA134905008
Clinical trialLINC00305
Miscellaneous
canSAR (ICR)LINC00305 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00305
EVEXLINC00305
GoPubMedLINC00305
iHOPLINC00305
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:11:23 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.