Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC00308 (long intergenic non-protein coding RNA 308)

Identity

Alias_namesC21orf74
NCRNA00308
chromosome 21 open reading frame 74
non-protein coding RNA 308
Alias_symbol (synonym)PRED16
Other alias
HGNC (Hugo) LINC00308
LocusID (NCBI) 54143
Atlas_Id 65358
Location 21q21.1  [Link to chromosome band 21q21]
Location_base_pair Starts at 22098617 and ends at 22116528 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00308   16023
Cards
Entrez_Gene (NCBI)LINC00308  54143  long intergenic non-protein coding RNA 308
AliasesC21orf74; NCRNA00308; PRED16
GeneCards (Weizmann)LINC00308
Ensembl hg19 (Hinxton)ENSG00000184856 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184856 [Gene_View]  chr21:22098617-22116528 [Contig_View]  LINC00308 [Vega]
ICGC DataPortalENSG00000184856
TCGA cBioPortalLINC00308
AceView (NCBI)LINC00308
Genatlas (Paris)LINC00308
WikiGenes54143
SOURCE (Princeton)LINC00308
Genetics Home Reference (NIH)LINC00308
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00308  -     chr21:22098617-22116528 +  21q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00308  -     21q21.1   [Description]    (hg19-Feb_2009)
EnsemblLINC00308 - 21q21.1 [CytoView hg19]  LINC00308 - 21q21.1 [CytoView hg38]
Mapping of homologs : NCBILINC00308 [Mapview hg19]  LINC00308 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY077696
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00308
Cluster EST : UnigeneHs.352631 [ NCBI ]
CGAP (NCI)Hs.352631
Alternative Splicing GalleryENSG00000184856
Gene ExpressionLINC00308 [ NCBI-GEO ]   LINC00308 [ EBI - ARRAY_EXPRESS ]   LINC00308 [ SEEK ]   LINC00308 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00308 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54143
GTEX Portal (Tissue expression)LINC00308
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TCZ7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TCZ7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TCZ7
Splice isoforms : SwissVarQ8TCZ7
PhosPhoSitePlusQ8TCZ7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00308
DMDM Disease mutations54143
Blocks (Seattle)LINC00308
SuperfamilyQ8TCZ7
Human Protein AtlasENSG00000184856
Peptide AtlasQ8TCZ7
IPIIPI00152497   
Protein Interaction databases
DIP (DOE-UCLA)Q8TCZ7
IntAct (EBI)Q8TCZ7
FunCoupENSG00000184856
BioGRIDLINC00308
STRING (EMBL)LINC00308
ZODIACLINC00308
Ontologies - Pathways
QuickGOQ8TCZ7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00308
Atlas of Cancer Signalling NetworkLINC00308
Wikipedia pathwaysLINC00308
Orthology - Evolution
OrthoDB54143
GeneTree (enSembl)ENSG00000184856
Phylogenetic Trees/Animal Genes : TreeFamLINC00308
HOVERGENQ8TCZ7
HOGENOMQ8TCZ7
Homologs : HomoloGeneLINC00308
Homology/Alignments : Family Browser (UCSC)LINC00308
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00308 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00308
dbVarLINC00308
ClinVarLINC00308
1000_GenomesLINC00308 
Exome Variant ServerLINC00308
ExAC (Exome Aggregation Consortium)LINC00308 (select the gene name)
Genetic variants : HAPMAP54143
Genomic Variants (DGV)LINC00308 [DGVbeta]
DECIPHERLINC00308 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00308 
Mutations
ICGC Data PortalLINC00308 
TCGA Data PortalLINC00308 
Broad Tumor PortalLINC00308
OASIS PortalLINC00308 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00308
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00308
DgiDB (Drug Gene Interaction Database)LINC00308
DoCM (Curated mutations)LINC00308 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00308 (select a term)
intoGenLINC00308
Cancer3DLINC00308(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00308
Genetic Testing Registry LINC00308
NextProtQ8TCZ7 [Medical]
TSGene54143
GENETestsLINC00308
Target ValidationLINC00308
Huge Navigator LINC00308 [HugePedia]
snp3D : Map Gene to Disease54143
BioCentury BCIQLINC00308
ClinGenLINC00308
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54143
Chemical/Pharm GKB GenePA142672214
Clinical trialLINC00308
Miscellaneous
canSAR (ICR)LINC00308 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00308
EVEXLINC00308
GoPubMedLINC00308
iHOPLINC00308
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:12:56 CEST 2017

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