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LINC00310 (long intergenic non-protein coding RNA 310)

Identity

Alias_namesC21orf82
NCRNA00310
chromosome 21 open reading frame 82
non-protein coding RNA 310
Other alias
HGNC (Hugo) LINC00310
LocusID (NCBI) 114036
Atlas_Id 65360
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 35552978 and ends at 35555546 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00310   16414
Cards
Entrez_Gene (NCBI)LINC00310  114036  long intergenic non-protein coding RNA 310
AliasesC21orf82; NCRNA00310
GeneCards (Weizmann)LINC00310
Ensembl hg19 (Hinxton)ENSG00000227456 [Gene_View]  chr21:35552978-35555546 [Contig_View]  LINC00310 [Vega]
Ensembl hg38 (Hinxton)ENSG00000227456 [Gene_View]  chr21:35552978-35555546 [Contig_View]  LINC00310 [Vega]
ICGC DataPortalENSG00000227456
TCGA cBioPortalLINC00310
AceView (NCBI)LINC00310
Genatlas (Paris)LINC00310
WikiGenes114036
SOURCE (Princeton)LINC00310
Genetics Home Reference (NIH)LINC00310
Genomic and cartography
GoldenPath hg19 (UCSC)LINC00310  -     chr21:35552978-35555546 +  21q22.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC00310  -     21q22.11   [Description]    (hg38-Dec_2013)
EnsemblLINC00310 - 21q22.11 [CytoView hg19]  LINC00310 - 21q22.11 [CytoView hg38]
Mapping of homologs : NCBILINC00310 [Mapview hg19]  LINC00310 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF426258 AK092704 BC093749 BC111996 HG511762
RefSeq transcript (Entrez)NM_153751
RefSeq genomic (Entrez)NC_000021 NC_018932 NT_011512 NW_004929426
Consensus coding sequences : CCDS (NCBI)LINC00310
Cluster EST : UnigeneHs.720230 [ NCBI ]
CGAP (NCI)Hs.720230
Alternative Splicing GalleryENSG00000227456
Gene ExpressionLINC00310 [ NCBI-GEO ]   LINC00310 [ EBI - ARRAY_EXPRESS ]   LINC00310 [ SEEK ]   LINC00310 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00310 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114036
GTEX Portal (Tissue expression)LINC00310
Protein : pattern, domain, 3D structure
UniProt/SwissProtP59036   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP59036  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP59036
Splice isoforms : SwissVarP59036
PhosPhoSitePlusP59036
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00310
DMDM Disease mutations114036
Blocks (Seattle)LINC00310
SuperfamilyP59036
Human Protein AtlasENSG00000227456
Peptide AtlasP59036
IPIIPI00168270   
Protein Interaction databases
DIP (DOE-UCLA)P59036
IntAct (EBI)P59036
FunCoupENSG00000227456
BioGRIDLINC00310
STRING (EMBL)LINC00310
ZODIACLINC00310
Ontologies - Pathways
QuickGOP59036
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00310
Atlas of Cancer Signalling NetworkLINC00310
Wikipedia pathwaysLINC00310
Orthology - Evolution
OrthoDB114036
GeneTree (enSembl)ENSG00000227456
Phylogenetic Trees/Animal Genes : TreeFamLINC00310
HOVERGENP59036
HOGENOMP59036
Homologs : HomoloGeneLINC00310
Homology/Alignments : Family Browser (UCSC)LINC00310
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00310 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00310
dbVarLINC00310
ClinVarLINC00310
1000_GenomesLINC00310 
Exome Variant ServerLINC00310
ExAC (Exome Aggregation Consortium)LINC00310 (select the gene name)
Genetic variants : HAPMAP114036
Genomic Variants (DGV)LINC00310 [DGVbeta]
DECIPHER (Syndromes)21:35552978-35555546  ENSG00000227456
CONAN: Copy Number AnalysisLINC00310 
Mutations
ICGC Data PortalLINC00310 
TCGA Data PortalLINC00310 
Broad Tumor PortalLINC00310
OASIS PortalLINC00310 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00310
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00310
DgiDB (Drug Gene Interaction Database)LINC00310
DoCM (Curated mutations)LINC00310 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00310 (select a term)
intoGenLINC00310
Cancer3DLINC00310(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00310
Genetic Testing Registry LINC00310
NextProtP59036 [Medical]
TSGene114036
GENETestsLINC00310
Huge Navigator LINC00310 [HugePedia]
snp3D : Map Gene to Disease114036
BioCentury BCIQLINC00310
ClinGenLINC00310
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114036
Chemical/Pharm GKB GenePA25869
Clinical trialLINC00310
Miscellaneous
canSAR (ICR)LINC00310 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00310
EVEXLINC00310
GoPubMedLINC00310
iHOPLINC00310
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:11:24 CET 2017

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