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LINC00311 (long intergenic non-protein coding RNA 311)

Identity

Alias_namesTMEM148
NCRNA00311
transmembrane protein 148
non-protein coding RNA 311
Alias_symbol (synonym)MGC22001
Other alias
HGNC (Hugo) LINC00311
LocusID (NCBI) 197196
Atlas_Id 65361
Location 16q24.1  [Link to chromosome band 16q24]
Location_base_pair Starts at 85282958 and ends at 85288079 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00311   28312
Cards
Entrez_Gene (NCBI)LINC00311  197196  long intergenic non-protein coding RNA 311
AliasesNCRNA00311; TMEM148
GeneCards (Weizmann)LINC00311
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:85282958-85288079 [Contig_View]  LINC00311 [Vega]
TCGA cBioPortalLINC00311
AceView (NCBI)LINC00311
Genatlas (Paris)LINC00311
WikiGenes197196
SOURCE (Princeton)LINC00311
Genetics Home Reference (NIH)LINC00311
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00311  -     chr16:85282958-85288079 +  16q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00311  -     16q24.1   [Description]    (hg19-Feb_2009)
EnsemblLINC00311 - 16q24.1 [CytoView hg19]  LINC00311 - 16q24.1 [CytoView hg38]
Mapping of homologs : NCBILINC00311 [Mapview hg19]  LINC00311 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC030801
RefSeq transcript (Entrez)NM_153238
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00311
Cluster EST : UnigeneHs.679002 [ NCBI ]
CGAP (NCI)Hs.679002
Gene ExpressionLINC00311 [ NCBI-GEO ]   LINC00311 [ EBI - ARRAY_EXPRESS ]   LINC00311 [ SEEK ]   LINC00311 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00311 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)197196
GTEX Portal (Tissue expression)LINC00311
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N616   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N616  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N616
Splice isoforms : SwissVarQ8N616
PhosPhoSitePlusQ8N616
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00311
DMDM Disease mutations197196
Blocks (Seattle)LINC00311
SuperfamilyQ8N616
Peptide AtlasQ8N616
HPRD14484
IPIIPI00166896   
Protein Interaction databases
DIP (DOE-UCLA)Q8N616
IntAct (EBI)Q8N616
BioGRIDLINC00311
STRING (EMBL)LINC00311
ZODIACLINC00311
Ontologies - Pathways
QuickGOQ8N616
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00311
Atlas of Cancer Signalling NetworkLINC00311
Wikipedia pathwaysLINC00311
Orthology - Evolution
OrthoDB197196
Phylogenetic Trees/Animal Genes : TreeFamLINC00311
HOVERGENQ8N616
HOGENOMQ8N616
Homologs : HomoloGeneLINC00311
Homology/Alignments : Family Browser (UCSC)LINC00311
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00311 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00311
dbVarLINC00311
ClinVarLINC00311
1000_GenomesLINC00311 
Exome Variant ServerLINC00311
ExAC (Exome Aggregation Consortium)LINC00311 (select the gene name)
Genetic variants : HAPMAP197196
Genomic Variants (DGV)LINC00311 [DGVbeta]
DECIPHERLINC00311 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00311 
Mutations
ICGC Data PortalLINC00311 
TCGA Data PortalLINC00311 
Broad Tumor PortalLINC00311
OASIS PortalLINC00311 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00311
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00311
DgiDB (Drug Gene Interaction Database)LINC00311
DoCM (Curated mutations)LINC00311 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00311 (select a term)
intoGenLINC00311
Cancer3DLINC00311(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00311
Genetic Testing Registry LINC00311
NextProtQ8N616 [Medical]
TSGene197196
GENETestsLINC00311
Target ValidationLINC00311
Huge Navigator LINC00311 [HugePedia]
snp3D : Map Gene to Disease197196
BioCentury BCIQLINC00311
ClinGenLINC00311
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD197196
Chemical/Pharm GKB GenePA144596256
Clinical trialLINC00311
Miscellaneous
canSAR (ICR)LINC00311 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00311
EVEXLINC00311
GoPubMedLINC00311
iHOPLINC00311
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:56:15 CEST 2017

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