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LINC00311 (long intergenic non-protein coding RNA 311)

Identity

Alias (NCBI)NCRNA00311
TMEM148
HGNC (Hugo) LINC00311
HGNC Alias symbMGC22001
HGNC Previous nameTMEM148
 NCRNA00311
HGNC Previous nametransmembrane protein 148
 non-protein coding RNA 311
LocusID (NCBI) 197196
Atlas_Id 65361
Location 16q24.1  [Link to chromosome band 16q24]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)LINC00311   28312
Cards
Entrez_Gene (NCBI)LINC00311    long intergenic non-protein coding RNA 311
AliasesNCRNA00311; TMEM148
GeneCards (Weizmann)LINC00311
Ensembl hg19 (Hinxton)ENSG00000179219 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179219 [Gene_View]  ENSG00000179219 [Sequence]  - [Contig_View]  LINC00311 [Vega]
ICGC DataPortalENSG00000179219
TCGA cBioPortalLINC00311
AceView (NCBI)LINC00311
Genatlas (Paris)LINC00311
SOURCE (Princeton)LINC00311
Genetics Home Reference (NIH)LINC00311
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00311  -  
GoldenPath hg19 (UCSC)LINC00311  -  
GoldenPathLINC00311 - [CytoView hg19]  LINC00311 - [CytoView hg38]
ImmunoBaseENSG00000179219
Genome Data Viewer NCBILINC00311 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC030801
RefSeq transcript (Entrez)NM_153238
Consensus coding sequences : CCDS (NCBI)LINC00311
Gene ExpressionLINC00311 [ NCBI-GEO ]   LINC00311 [ EBI - ARRAY_EXPRESS ]   LINC00311 [ SEEK ]   LINC00311 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00311 [ Firebrowse - Broad ]
GenevisibleExpression of LINC00311 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)197196
GTEX Portal (Tissue expression)LINC00311
Human Protein AtlasENSG00000179219-LINC00311 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N616   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N616  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N616
PhosPhoSitePlusQ8N616
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00311
SuperfamilyQ8N616
AlphaFold pdb e-kbQ8N616   
Human Protein Atlas [tissue]ENSG00000179219-LINC00311 [tissue]
HPRD14484
Protein Interaction databases
DIP (DOE-UCLA)Q8N616
IntAct (EBI)Q8N616
BioGRIDLINC00311
STRING (EMBL)LINC00311
ZODIACLINC00311
Ontologies - Pathways
QuickGOQ8N616
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00311
Atlas of Cancer Signalling NetworkLINC00311
Wikipedia pathwaysLINC00311
Orthology - Evolution
OrthoDB197196
GeneTree (enSembl)ENSG00000179219
Phylogenetic Trees/Animal Genes : TreeFamLINC00311
Homologs : HomoloGeneLINC00311
Homology/Alignments : Family Browser (UCSC)LINC00311
Gene fusions - Rearrangements
Fusion : QuiverLINC00311
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00311 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00311
dbVarLINC00311
ClinVarLINC00311
MonarchLINC00311
1000_GenomesLINC00311 
Exome Variant ServerLINC00311
GNOMAD BrowserENSG00000179219
Varsome BrowserLINC00311
ACMGLINC00311 variants
VarityQ8N616
Genomic Variants (DGV)LINC00311 [DGVbeta]
DECIPHERLINC00311 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00311 
Mutations
ICGC Data PortalLINC00311 
TCGA Data PortalLINC00311 
Broad Tumor PortalLINC00311
OASIS PortalLINC00311 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00311
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaLINC00311
DgiDB (Drug Gene Interaction Database)LINC00311
DoCM (Curated mutations)LINC00311
CIViC (Clinical Interpretations of Variants in Cancer)LINC00311
Cancer3DLINC00311
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLINC00311
MedgenLINC00311
Genetic Testing Registry LINC00311
NextProtQ8N616 [Medical]
GENETestsLINC00311
Target ValidationLINC00311
Huge Navigator LINC00311 [HugePedia]
ClinGenLINC00311
Clinical trials, drugs, therapy
MyCancerGenomeLINC00311
Protein Interactions : CTDLINC00311
Pharm GKB GenePA144596256
PharosQ8N616
Clinical trialLINC00311
Miscellaneous
canSAR (ICR)LINC00311
HarmonizomeLINC00311
DataMed IndexLINC00311
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXLINC00311
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:55:53 CEST 2021

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