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LINC00312 (long intergenic non-protein coding RNA 312)

Identity

Alias_namesLOH3CR2A
NCRNA00312
loss of heterozygosity, 3, chromosomal region 2, gene A
non-protein coding RNA 312
Alias_symbol (synonym)NAG7
NAG-7
ERR10
ERR-10
LMCD1DN
Other alias
HGNC (Hugo) LINC00312
LocusID (NCBI) 29931
Atlas_Id 52314
Location 3p26.1  [Link to chromosome band 3p26]
Location_base_pair Starts at 8613891 and ends at 8615564 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
LINC00312 (3p26.1) / ATF4 (22q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00312   6662
Cards
Entrez_Gene (NCBI)LINC00312  29931  long intergenic non-protein coding RNA 312
AliasesERR-10; ERR10; LMCD1DN; LOH3CR2A; 
NAG-7; NAG7; NCRNA00312
GeneCards (Weizmann)LINC00312
Ensembl hg19 (Hinxton) [Gene_View]  chr3:8613891-8615564 [Contig_View]  LINC00312 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr3:8613891-8615564 [Contig_View]  LINC00312 [Vega]
TCGA cBioPortalLINC00312
AceView (NCBI)LINC00312
Genatlas (Paris)LINC00312
WikiGenes29931
SOURCE (Princeton)LINC00312
Genetics Home Reference (NIH)LINC00312
Genomic and cartography
GoldenPath hg19 (UCSC)LINC00312  -     chr3:8613891-8615564 +  3p26.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC00312  -     3p26.1   [Description]    (hg38-Dec_2013)
EnsemblLINC00312 - 3p26.1 [CytoView hg19]  LINC00312 - 3p26.1 [CytoView hg38]
Mapping of homologs : NCBILINC00312 [Mapview hg19]  LINC00312 [Mapview hg38]
OMIM610485   
Gene and transcription
Genbank (Entrez)AF086709 AK054898 AW269670 BC009773 BC016278
RefSeq transcript (Entrez)NM_013343
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_022517 NW_004929309
Consensus coding sequences : CCDS (NCBI)LINC00312
Cluster EST : UnigeneHs.433151 [ NCBI ]
CGAP (NCI)Hs.433151
Gene ExpressionLINC00312 [ NCBI-GEO ]   LINC00312 [ EBI - ARRAY_EXPRESS ]   LINC00312 [ SEEK ]   LINC00312 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00312 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29931
GTEX Portal (Tissue expression)LINC00312
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y6C7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y6C7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y6C7
Splice isoforms : SwissVarQ9Y6C7
PhosPhoSitePlusQ9Y6C7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00312
DMDM Disease mutations29931
Blocks (Seattle)LINC00312
SuperfamilyQ9Y6C7
Peptide AtlasQ9Y6C7
HPRD17440
IPIIPI00002162   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y6C7
IntAct (EBI)Q9Y6C7
BioGRIDLINC00312
STRING (EMBL)LINC00312
ZODIACLINC00312
Ontologies - Pathways
QuickGOQ9Y6C7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00312
Atlas of Cancer Signalling NetworkLINC00312
Wikipedia pathwaysLINC00312
Orthology - Evolution
OrthoDB29931
Phylogenetic Trees/Animal Genes : TreeFamLINC00312
HOVERGENQ9Y6C7
HOGENOMQ9Y6C7
Homologs : HomoloGeneLINC00312
Homology/Alignments : Family Browser (UCSC)LINC00312
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00312 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00312
dbVarLINC00312
ClinVarLINC00312
1000_GenomesLINC00312 
Exome Variant ServerLINC00312
ExAC (Exome Aggregation Consortium)LINC00312 (select the gene name)
Genetic variants : HAPMAP29931
Genomic Variants (DGV)LINC00312 [DGVbeta]
DECIPHER (Syndromes)3:8613891-8615564  
CONAN: Copy Number AnalysisLINC00312 
Mutations
ICGC Data PortalLINC00312 
TCGA Data PortalLINC00312 
Broad Tumor PortalLINC00312
OASIS PortalLINC00312 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00312
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00312
DgiDB (Drug Gene Interaction Database)LINC00312
DoCM (Curated mutations)LINC00312 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00312 (select a term)
intoGenLINC00312
Cancer3DLINC00312(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610485   
Orphanet
MedgenLINC00312
Genetic Testing Registry LINC00312
NextProtQ9Y6C7 [Medical]
TSGene29931
GENETestsLINC00312
Huge Navigator LINC00312 [HugePedia]
snp3D : Map Gene to Disease29931
BioCentury BCIQLINC00312
ClinGenLINC00312
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29931
Chemical/Pharm GKB GenePA30425
Clinical trialLINC00312
Miscellaneous
canSAR (ICR)LINC00312 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00312
EVEXLINC00312
GoPubMedLINC00312
iHOPLINC00312
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:07:05 CEST 2017

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