Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC00313 (long intergenic non-protein coding RNA 313)

Identity

Alias_namesC21orf84
NCRNA00313
chromosome 21 open reading frame 84
non-protein coding RNA 313
Other aliasCH507-42P11.5
HGNC (Hugo) LINC00313
LocusID (NCBI) 114038
Atlas_Id 65362
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 44881974 and ends at 44898103 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00313   16416
Cards
Entrez_Gene (NCBI)LINC00313  114038  long intergenic non-protein coding RNA 313
AliasesC21orf84; CH507-42P11.5; NCRNA00313
GeneCards (Weizmann)LINC00313
Ensembl hg19 (Hinxton)ENSG00000185186 [Gene_View]  chr21:44881974-44898103 [Contig_View]  LINC00313 [Vega]
Ensembl hg38 (Hinxton)ENSG00000185186 [Gene_View]  chr21:44881974-44898103 [Contig_View]  LINC00313 [Vega]
ICGC DataPortalENSG00000185186
TCGA cBioPortalLINC00313
AceView (NCBI)LINC00313
Genatlas (Paris)LINC00313
WikiGenes114038
SOURCE (Princeton)LINC00313
Genetics Home Reference (NIH)LINC00313
Genomic and cartography
GoldenPath hg19 (UCSC)LINC00313  -     chr21:44881974-44898103 -  21q22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC00313  -     21q22.3   [Description]    (hg38-Dec_2013)
EnsemblLINC00313 - 21q22.3 [CytoView hg19]  LINC00313 - 21q22.3 [CytoView hg38]
Mapping of homologs : NCBILINC00313 [Mapview hg19]  LINC00313 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF426261 BC107109 HG511872 HG511873 HG511874
RefSeq transcript (Entrez)NM_153752
RefSeq genomic (Entrez)NC_000021 NC_018932 NT_011512 NW_004929427
Consensus coding sequences : CCDS (NCBI)LINC00313
Cluster EST : UnigeneHs.592161 [ NCBI ]
CGAP (NCI)Hs.592161
Alternative Splicing GalleryENSG00000185186
Gene ExpressionLINC00313 [ NCBI-GEO ]   LINC00313 [ EBI - ARRAY_EXPRESS ]   LINC00313 [ SEEK ]   LINC00313 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00313 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114038
GTEX Portal (Tissue expression)LINC00313
Protein : pattern, domain, 3D structure
UniProt/SwissProtP59037   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP59037  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP59037
Splice isoforms : SwissVarP59037
PhosPhoSitePlusP59037
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00313
DMDM Disease mutations114038
Blocks (Seattle)LINC00313
SuperfamilyP59037
Human Protein AtlasENSG00000185186
Peptide AtlasP59037
HPRD10770
IPIIPI00168271   
Protein Interaction databases
DIP (DOE-UCLA)P59037
IntAct (EBI)P59037
FunCoupENSG00000185186
BioGRIDLINC00313
STRING (EMBL)LINC00313
ZODIACLINC00313
Ontologies - Pathways
QuickGOP59037
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00313
Atlas of Cancer Signalling NetworkLINC00313
Wikipedia pathwaysLINC00313
Orthology - Evolution
OrthoDB114038
GeneTree (enSembl)ENSG00000185186
Phylogenetic Trees/Animal Genes : TreeFamLINC00313
HOVERGENP59037
HOGENOMP59037
Homologs : HomoloGeneLINC00313
Homology/Alignments : Family Browser (UCSC)LINC00313
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00313 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00313
dbVarLINC00313
ClinVarLINC00313
1000_GenomesLINC00313 
Exome Variant ServerLINC00313
ExAC (Exome Aggregation Consortium)LINC00313 (select the gene name)
Genetic variants : HAPMAP114038
Genomic Variants (DGV)LINC00313 [DGVbeta]
DECIPHER (Syndromes)21:44881974-44898103  ENSG00000185186
CONAN: Copy Number AnalysisLINC00313 
Mutations
ICGC Data PortalLINC00313 
TCGA Data PortalLINC00313 
Broad Tumor PortalLINC00313
OASIS PortalLINC00313 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00313
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00313
DgiDB (Drug Gene Interaction Database)LINC00313
DoCM (Curated mutations)LINC00313 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00313 (select a term)
intoGenLINC00313
Cancer3DLINC00313(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00313
Genetic Testing Registry LINC00313
NextProtP59037 [Medical]
TSGene114038
GENETestsLINC00313
Huge Navigator LINC00313 [HugePedia]
snp3D : Map Gene to Disease114038
BioCentury BCIQLINC00313
ClinGenLINC00313
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114038
Chemical/Pharm GKB GenePA25871
Clinical trialLINC00313
Miscellaneous
canSAR (ICR)LINC00313 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00313
EVEXLINC00313
GoPubMedLINC00313
iHOPLINC00313
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:11:24 CET 2017

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