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LINC00315 (long intergenic non-protein coding RNA 315)

Identity

Alias_namesC21orf93
NCRNA00315
chromosome 21 open reading frame 93
non-protein coding RNA 315
Other alias
HGNC (Hugo) LINC00315
LocusID (NCBI) 246704
Atlas_Id 65364
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 46720160 and ends at 46725172 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC00315   16621
Cards
Entrez_Gene (NCBI)LINC00315  246704  long intergenic non-protein coding RNA 315
AliasesC21orf93; NCRNA00315
GeneCards (Weizmann)LINC00315
Ensembl hg19 (Hinxton) [Gene_View]  chr21:46720160-46725172 [Contig_View]  LINC00315 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr21:46720160-46725172 [Contig_View]  LINC00315 [Vega]
TCGA cBioPortalLINC00315
AceView (NCBI)LINC00315
Genatlas (Paris)LINC00315
WikiGenes246704
SOURCE (Princeton)LINC00315
Genetics Home Reference (NIH)LINC00315
Genomic and cartography
GoldenPath hg19 (UCSC)LINC00315  -     chr21:46720160-46725172 -  21q22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC00315  -     21q22.3   [Description]    (hg38-Dec_2013)
EnsemblLINC00315 - 21q22.3 [CytoView hg19]  LINC00315 - 21q22.3 [CytoView hg38]
Mapping of homologs : NCBILINC00315 [Mapview hg19]  LINC00315 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF427488
RefSeq transcript (Entrez)NM_145179
RefSeq genomic (Entrez)AC_000153 NC_000021 NC_018932 NT_011515 NW_001838716 NW_004078109
Consensus coding sequences : CCDS (NCBI)LINC00315
Cluster EST : UnigeneHs.171428 [ NCBI ]
CGAP (NCI)Hs.171428
Gene ExpressionLINC00315 [ NCBI-GEO ]   LINC00315 [ EBI - ARRAY_EXPRESS ]   LINC00315 [ SEEK ]   LINC00315 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00315 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)246704
GTEX Portal (Tissue expression)LINC00315
Protein : pattern, domain, 3D structure
UniProt/SwissProtP59091   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP59091  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP59091
Splice isoforms : SwissVarP59091
PhosPhoSitePlusP59091
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00315
DMDM Disease mutations246704
Blocks (Seattle)LINC00315
SuperfamilyP59091
Peptide AtlasP59091
HPRD10777
IPIIPI00171429   
Protein Interaction databases
DIP (DOE-UCLA)P59091
IntAct (EBI)P59091
BioGRIDLINC00315
STRING (EMBL)LINC00315
ZODIACLINC00315
Ontologies - Pathways
QuickGOP59091
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00315
Atlas of Cancer Signalling NetworkLINC00315
Wikipedia pathwaysLINC00315
Orthology - Evolution
OrthoDB246704
Phylogenetic Trees/Animal Genes : TreeFamLINC00315
HOVERGENP59091
HOGENOMP59091
Homologs : HomoloGeneLINC00315
Homology/Alignments : Family Browser (UCSC)LINC00315
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00315 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00315
dbVarLINC00315
ClinVarLINC00315
1000_GenomesLINC00315 
Exome Variant ServerLINC00315
ExAC (Exome Aggregation Consortium)LINC00315 (select the gene name)
Genetic variants : HAPMAP246704
Genomic Variants (DGV)LINC00315 [DGVbeta]
DECIPHER (Syndromes)21:46720160-46725172  
CONAN: Copy Number AnalysisLINC00315 
Mutations
ICGC Data PortalLINC00315 
TCGA Data PortalLINC00315 
Broad Tumor PortalLINC00315
OASIS PortalLINC00315 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00315
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00315
DgiDB (Drug Gene Interaction Database)LINC00315
DoCM (Curated mutations)LINC00315 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00315 (select a term)
intoGenLINC00315
Cancer3DLINC00315(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00315
Genetic Testing Registry LINC00315
NextProtP59091 [Medical]
TSGene246704
GENETestsLINC00315
Huge Navigator LINC00315 [HugePedia]
snp3D : Map Gene to Disease246704
BioCentury BCIQLINC00315
ClinGenLINC00315
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD246704
Chemical/Pharm GKB GenePA134956689
Clinical trialLINC00315
Miscellaneous
canSAR (ICR)LINC00315 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00315
EVEXLINC00315
GoPubMedLINC00315
iHOPLINC00315
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:11:25 CET 2017

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