Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC00316 (long intergenic non-protein coding RNA 316)

Identity

Alias_namesC21orf111
NCRNA00316
chromosome 21 open reading frame 111
non-protein coding RNA 316
Alias_symbol (synonym)PRED59
Other alias
HGNC (Hugo) LINC00316
LocusID (NCBI) 388830
Atlas_Id 65365
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 46758505 and ends at 46761905 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00316   19723
Cards
Entrez_Gene (NCBI)LINC00316  388830  long intergenic non-protein coding RNA 316
AliasesC21orf111; NCRNA00316; PRED59
GeneCards (Weizmann)LINC00316
Ensembl hg19 (Hinxton)ENSG00000237664 [Gene_View]  chr21:46758505-46761905 [Contig_View]  LINC00316 [Vega]
Ensembl hg38 (Hinxton)ENSG00000237664 [Gene_View]  chr21:46758505-46761905 [Contig_View]  LINC00316 [Vega]
ICGC DataPortalENSG00000237664
TCGA cBioPortalLINC00316
AceView (NCBI)LINC00316
Genatlas (Paris)LINC00316
WikiGenes388830
SOURCE (Princeton)LINC00316
Genetics Home Reference (NIH)LINC00316
Genomic and cartography
GoldenPath hg19 (UCSC)LINC00316  -     chr21:46758505-46761905 -  21q22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC00316  -     21q22.3   [Description]    (hg38-Dec_2013)
EnsemblLINC00316 - 21q22.3 [CytoView hg19]  LINC00316 - 21q22.3 [CytoView hg38]
Mapping of homologs : NCBILINC00316 [Mapview hg19]  LINC00316 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BG221750 BG221754 HG511918
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000021 NC_018932 NT_011512 NW_004929427
Consensus coding sequences : CCDS (NCBI)LINC00316
Cluster EST : UnigeneHs.592162 [ NCBI ]
CGAP (NCI)Hs.592162
Alternative Splicing GalleryENSG00000237664
Gene ExpressionLINC00316 [ NCBI-GEO ]   LINC00316 [ EBI - ARRAY_EXPRESS ]   LINC00316 [ SEEK ]   LINC00316 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00316 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)388830
GTEX Portal (Tissue expression)LINC00316
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00316
DMDM Disease mutations388830
Blocks (Seattle)LINC00316
Human Protein AtlasENSG00000237664
IPIIPI00022053   
Protein Interaction databases
FunCoupENSG00000237664
BioGRIDLINC00316
STRING (EMBL)LINC00316
ZODIACLINC00316
Ontologies - Pathways
Huge Navigator LINC00316 [HugePedia]
snp3D : Map Gene to Disease388830
BioCentury BCIQLINC00316
ClinGenLINC00316
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388830
Chemical/Pharm GKB GenePA134990064
Clinical trialLINC00316
Miscellaneous
canSAR (ICR)LINC00316 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00316
EVEXLINC00316
GoPubMedLINC00316
iHOPLINC00316
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:11:25 CET 2017

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