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LINC00317 (long intergenic non-protein coding RNA 317)

Identity

Alias_namesC21orf117
NCRNA00317
chromosome 21 open reading frame 117
non-protein coding RNA 317
Alias_symbol (synonym)PRED89
Other alias
HGNC (Hugo) LINC00317
LocusID (NCBI) 378828
Atlas_Id 65366
Location 21q21.1  [Link to chromosome band 21q21]
Location_base_pair Starts at 23095613 and ends at 23109639 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00317   23126
Cards
Entrez_Gene (NCBI)LINC00317  378828  long intergenic non-protein coding RNA 317
AliasesC21orf117; NCRNA00317; PRED89
GeneCards (Weizmann)LINC00317
Ensembl hg19 (Hinxton)ENSG00000238265 [Gene_View]  chr21:23095613-23109639 [Contig_View]  LINC00317 [Vega]
Ensembl hg38 (Hinxton)ENSG00000238265 [Gene_View]  chr21:23095613-23109639 [Contig_View]  LINC00317 [Vega]
ICGC DataPortalENSG00000238265
TCGA cBioPortalLINC00317
AceView (NCBI)LINC00317
Genatlas (Paris)LINC00317
WikiGenes378828
SOURCE (Princeton)LINC00317
Genetics Home Reference (NIH)LINC00317
Genomic and cartography
GoldenPath hg19 (UCSC)LINC00317  -     chr21:23095613-23109639 -  21q21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC00317  -     21q21.1   [Description]    (hg38-Dec_2013)
EnsemblLINC00317 - 21q21.1 [CytoView hg19]  LINC00317 - 21q21.1 [CytoView hg38]
Mapping of homologs : NCBILINC00317 [Mapview hg19]  LINC00317 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC009878 BF026848 HG511633
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000021 NC_018932 NT_011512 NW_004929426
Consensus coding sequences : CCDS (NCBI)LINC00317
Cluster EST : UnigeneHs.551009 [ NCBI ]
CGAP (NCI)Hs.551009
Alternative Splicing GalleryENSG00000238265
Gene ExpressionLINC00317 [ NCBI-GEO ]   LINC00317 [ EBI - ARRAY_EXPRESS ]   LINC00317 [ SEEK ]   LINC00317 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00317 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)378828
GTEX Portal (Tissue expression)LINC00317
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00317
DMDM Disease mutations378828
Blocks (Seattle)LINC00317
Human Protein AtlasENSG00000238265
Protein Interaction databases
FunCoupENSG00000238265
BioGRIDLINC00317
STRING (EMBL)LINC00317
ZODIACLINC00317
Ontologies - Pathways
Huge Navigator LINC00317 [HugePedia]
snp3D : Map Gene to Disease378828
BioCentury BCIQLINC00317
ClinGenLINC00317
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD378828
Chemical/Pharm GKB GenePA134955566
Clinical trialLINC00317
Miscellaneous
canSAR (ICR)LINC00317 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00317
EVEXLINC00317
GoPubMedLINC00317
iHOPLINC00317
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:11:25 CET 2017

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