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LINC00322 (long intergenic non-protein coding RNA 322)

Identity

Alias_namesC21orf136
NCRNA00322
chromosome 21 open reading frame 136
non-protein coding RNA 322
Alias_symbol (synonym)FLJ16545
Other alias
HGNC (Hugo) LINC00322
LocusID (NCBI) 100126693
Atlas_Id 65369
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 43322209 and ends at 43332039 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00322   33698
Cards
Entrez_Gene (NCBI)LINC00322  100126693  long intergenic non-protein coding RNA 322
AliasesC21orf136; NCRNA00322
GeneCards (Weizmann)LINC00322
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr21:43322209-43332039 [Contig_View]  LINC00322 [Vega]
TCGA cBioPortalLINC00322
AceView (NCBI)LINC00322
Genatlas (Paris)LINC00322
WikiGenes100126693
SOURCE (Princeton)LINC00322
Genetics Home Reference (NIH)LINC00322
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00322  -     chr21:43322209-43332039 -  21q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00322  -     21q22.3   [Description]    (hg19-Feb_2009)
EnsemblLINC00322 - 21q22.3 [CytoView hg19]  LINC00322 - 21q22.3 [CytoView hg38]
Mapping of homologs : NCBILINC00322 [Mapview hg19]  LINC00322 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK131425 BM691132
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00322
Cluster EST : UnigeneHs.473952 [ NCBI ]
CGAP (NCI)Hs.473952
Gene ExpressionLINC00322 [ NCBI-GEO ]   LINC00322 [ EBI - ARRAY_EXPRESS ]   LINC00322 [ SEEK ]   LINC00322 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00322 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100126693
GTEX Portal (Tissue expression)LINC00322
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZN03   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZN03  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZN03
Splice isoforms : SwissVarQ6ZN03
PhosPhoSitePlusQ6ZN03
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00322
DMDM Disease mutations100126693
Blocks (Seattle)LINC00322
SuperfamilyQ6ZN03
Peptide AtlasQ6ZN03
IPIIPI00442033   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZN03
IntAct (EBI)Q6ZN03
BioGRIDLINC00322
STRING (EMBL)LINC00322
ZODIACLINC00322
Ontologies - Pathways
QuickGOQ6ZN03
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00322
Atlas of Cancer Signalling NetworkLINC00322
Wikipedia pathwaysLINC00322
Orthology - Evolution
OrthoDB100126693
Phylogenetic Trees/Animal Genes : TreeFamLINC00322
HOVERGENQ6ZN03
HOGENOMQ6ZN03
Homologs : HomoloGeneLINC00322
Homology/Alignments : Family Browser (UCSC)LINC00322
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00322 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00322
dbVarLINC00322
ClinVarLINC00322
1000_GenomesLINC00322 
Exome Variant ServerLINC00322
ExAC (Exome Aggregation Consortium)LINC00322 (select the gene name)
Genetic variants : HAPMAP100126693
Genomic Variants (DGV)LINC00322 [DGVbeta]
DECIPHERLINC00322 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00322 
Mutations
ICGC Data PortalLINC00322 
TCGA Data PortalLINC00322 
Broad Tumor PortalLINC00322
OASIS PortalLINC00322 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00322
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00322
DgiDB (Drug Gene Interaction Database)LINC00322
DoCM (Curated mutations)LINC00322 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00322 (select a term)
intoGenLINC00322
Cancer3DLINC00322(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00322
Genetic Testing Registry LINC00322
NextProtQ6ZN03 [Medical]
TSGene100126693
GENETestsLINC00322
Target ValidationLINC00322
Huge Navigator LINC00322 [HugePedia]
snp3D : Map Gene to Disease100126693
BioCentury BCIQLINC00322
ClinGenLINC00322
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100126693
Clinical trialLINC00322
Miscellaneous
canSAR (ICR)LINC00322 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00322
EVEXLINC00322
GoPubMedLINC00322
iHOPLINC00322
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:19:23 CEST 2017

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