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LINC00336 (long intergenic non-protein coding RNA 336)

Identity

Alias_namesC6orf227
NCRNA00336
chromosome 6 open reading frame 227
non-protein coding RNA 336
Alias_symbol (synonym)FLJ43752
Other alias
HGNC (Hugo) LINC00336
LocusID (NCBI) 401253
Atlas_Id 65379
Location 6p21.31  [Link to chromosome band 6p21]
Location_base_pair Starts at 33586106 and ends at 33593338 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00336   33813
Cards
Entrez_Gene (NCBI)LINC00336  401253  long intergenic non-protein coding RNA 336
AliasesC6orf227; NCRNA00336
GeneCards (Weizmann)LINC00336
Ensembl hg19 (Hinxton)ENSG00000197251 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197251 [Gene_View]  chr6:33586106-33593338 [Contig_View]  LINC00336 [Vega]
ICGC DataPortalENSG00000197251
TCGA cBioPortalLINC00336
AceView (NCBI)LINC00336
Genatlas (Paris)LINC00336
WikiGenes401253
SOURCE (Princeton)LINC00336
Genetics Home Reference (NIH)LINC00336
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00336  -     chr6:33586106-33593338 -  6p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00336  -     6p21.31   [Description]    (hg19-Feb_2009)
EnsemblLINC00336 - 6p21.31 [CytoView hg19]  LINC00336 - 6p21.31 [CytoView hg38]
Mapping of homologs : NCBILINC00336 [Mapview hg19]  LINC00336 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK125740
RefSeq transcript (Entrez)NM_207497
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00336
Cluster EST : UnigeneHs.520075 [ NCBI ]
CGAP (NCI)Hs.520075
Alternative Splicing GalleryENSG00000197251
Gene ExpressionLINC00336 [ NCBI-GEO ]   LINC00336 [ EBI - ARRAY_EXPRESS ]   LINC00336 [ SEEK ]   LINC00336 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00336 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401253
GTEX Portal (Tissue expression)LINC00336
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZUF6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZUF6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZUF6
Splice isoforms : SwissVarQ6ZUF6
PhosPhoSitePlusQ6ZUF6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00336
DMDM Disease mutations401253
Blocks (Seattle)LINC00336
SuperfamilyQ6ZUF6
Human Protein AtlasENSG00000197251
Peptide AtlasQ6ZUF6
HPRD16966
IPIIPI00401125   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZUF6
IntAct (EBI)Q6ZUF6
FunCoupENSG00000197251
BioGRIDLINC00336
STRING (EMBL)LINC00336
ZODIACLINC00336
Ontologies - Pathways
QuickGOQ6ZUF6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00336
Atlas of Cancer Signalling NetworkLINC00336
Wikipedia pathwaysLINC00336
Orthology - Evolution
OrthoDB401253
GeneTree (enSembl)ENSG00000197251
Phylogenetic Trees/Animal Genes : TreeFamLINC00336
HOVERGENQ6ZUF6
HOGENOMQ6ZUF6
Homologs : HomoloGeneLINC00336
Homology/Alignments : Family Browser (UCSC)LINC00336
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00336 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00336
dbVarLINC00336
ClinVarLINC00336
1000_GenomesLINC00336 
Exome Variant ServerLINC00336
ExAC (Exome Aggregation Consortium)LINC00336 (select the gene name)
Genetic variants : HAPMAP401253
Genomic Variants (DGV)LINC00336 [DGVbeta]
DECIPHERLINC00336 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00336 
Mutations
ICGC Data PortalLINC00336 
TCGA Data PortalLINC00336 
Broad Tumor PortalLINC00336
OASIS PortalLINC00336 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00336
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00336
DgiDB (Drug Gene Interaction Database)LINC00336
DoCM (Curated mutations)LINC00336 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00336 (select a term)
intoGenLINC00336
Cancer3DLINC00336(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00336
Genetic Testing Registry LINC00336
NextProtQ6ZUF6 [Medical]
TSGene401253
GENETestsLINC00336
Target ValidationLINC00336
Huge Navigator LINC00336 [HugePedia]
snp3D : Map Gene to Disease401253
BioCentury BCIQLINC00336
ClinGenLINC00336
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401253
Chemical/Pharm GKB GenePA164717365
Clinical trialLINC00336
Miscellaneous
canSAR (ICR)LINC00336 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00336
EVEXLINC00336
GoPubMedLINC00336
iHOPLINC00336
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:12:59 CEST 2017

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