Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC00337 (long intergenic non-protein coding RNA 337)

Identity

Alias_namesC1orf211
NCRNA00337
chromosome 1 open reading frame 211
non-protein coding RNA 337
Alias_symbol (synonym)MGC40168
Other alias
HGNC (Hugo) LINC00337
LocusID (NCBI) 148645
Atlas_Id 65380
Location 1p36.31  [Link to chromosome band 1p36]
Location_base_pair Starts at 6237811 and ends at 6239442 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LINC00337 (1p36.31) / CHCHD3 (7q32.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00337   28620
Cards
Entrez_Gene (NCBI)LINC00337  148645  long intergenic non-protein coding RNA 337
AliasesC1orf211; NCRNA00337
GeneCards (Weizmann)LINC00337
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:6237811-6239442 [Contig_View]  LINC00337 [Vega]
TCGA cBioPortalLINC00337
AceView (NCBI)LINC00337
Genatlas (Paris)LINC00337
WikiGenes148645
SOURCE (Princeton)LINC00337
Genetics Home Reference (NIH)LINC00337
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00337  -     chr1:6237811-6239442 +  1p36.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00337  -     1p36.31   [Description]    (hg19-Feb_2009)
EnsemblLINC00337 - 1p36.31 [CytoView hg19]  LINC00337 - 1p36.31 [CytoView hg38]
Mapping of homologs : NCBILINC00337 [Mapview hg19]  LINC00337 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC030279 BE546866
RefSeq transcript (Entrez)NM_153709
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00337
Cluster EST : UnigeneHs.185688 [ NCBI ]
CGAP (NCI)Hs.185688
Gene ExpressionLINC00337 [ NCBI-GEO ]   LINC00337 [ EBI - ARRAY_EXPRESS ]   LINC00337 [ SEEK ]   LINC00337 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00337 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)148645
GTEX Portal (Tissue expression)LINC00337
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N6G1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N6G1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N6G1
Splice isoforms : SwissVarQ8N6G1
PhosPhoSitePlusQ8N6G1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00337
DMDM Disease mutations148645
Blocks (Seattle)LINC00337
SuperfamilyQ8N6G1
Peptide AtlasQ8N6G1
HPRD17550
IPIIPI00167005   
Protein Interaction databases
DIP (DOE-UCLA)Q8N6G1
IntAct (EBI)Q8N6G1
BioGRIDLINC00337
STRING (EMBL)LINC00337
ZODIACLINC00337
Ontologies - Pathways
QuickGOQ8N6G1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00337
Atlas of Cancer Signalling NetworkLINC00337
Wikipedia pathwaysLINC00337
Orthology - Evolution
OrthoDB148645
Phylogenetic Trees/Animal Genes : TreeFamLINC00337
HOVERGENQ8N6G1
HOGENOMQ8N6G1
Homologs : HomoloGeneLINC00337
Homology/Alignments : Family Browser (UCSC)LINC00337
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00337 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00337
dbVarLINC00337
ClinVarLINC00337
1000_GenomesLINC00337 
Exome Variant ServerLINC00337
ExAC (Exome Aggregation Consortium)LINC00337 (select the gene name)
Genetic variants : HAPMAP148645
Genomic Variants (DGV)LINC00337 [DGVbeta]
DECIPHERLINC00337 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00337 
Mutations
ICGC Data PortalLINC00337 
TCGA Data PortalLINC00337 
Broad Tumor PortalLINC00337
OASIS PortalLINC00337 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00337
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00337
DgiDB (Drug Gene Interaction Database)LINC00337
DoCM (Curated mutations)LINC00337 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00337 (select a term)
intoGenLINC00337
Cancer3DLINC00337(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00337
Genetic Testing Registry LINC00337
NextProtQ8N6G1 [Medical]
TSGene148645
GENETestsLINC00337
Target ValidationLINC00337
Huge Navigator LINC00337 [HugePedia]
snp3D : Map Gene to Disease148645
BioCentury BCIQLINC00337
ClinGenLINC00337
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD148645
Chemical/Pharm GKB GenePA144596511
Clinical trialLINC00337
Miscellaneous
canSAR (ICR)LINC00337 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00337
EVEXLINC00337
GoPubMedLINC00337
iHOPLINC00337
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:56:19 CEST 2017

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