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LINC00339 (long intergenic non-protein coding RNA 339)

Identity

Alias_namesNCRNA00339
non-protein coding RNA 339
Alias_symbol (synonym)HSPC157
Other alias
HGNC (Hugo) LINC00339
LocusID (NCBI) 29092
Atlas_Id 40885
Location 1p36.12  [Link to chromosome band 1p36]
Location_base_pair Starts at 22025191 and ends at 22031224 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00339   25011
Cards
Entrez_Gene (NCBI)LINC00339  29092  long intergenic non-protein coding RNA 339
AliasesHSPC157; NCRNA00339
GeneCards (Weizmann)LINC00339
Ensembl hg19 (Hinxton)ENSG00000218510 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000218510 [Gene_View]  chr1:22025191-22031224 [Contig_View]  LINC00339 [Vega]
ICGC DataPortalENSG00000218510
TCGA cBioPortalLINC00339
AceView (NCBI)LINC00339
Genatlas (Paris)LINC00339
WikiGenes29092
SOURCE (Princeton)LINC00339
Genetics Home Reference (NIH)LINC00339
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00339  -     chr1:22025191-22031224 +  1p36.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00339  -     1p36.12   [Description]    (hg19-Feb_2009)
EnsemblLINC00339 - 1p36.12 [CytoView hg19]  LINC00339 - 1p36.12 [CytoView hg38]
Mapping of homologs : NCBILINC00339 [Mapview hg19]  LINC00339 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF161506 BC016053 BC040947 BC056896 BC071749
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00339
Cluster EST : UnigeneHs.279842 [ NCBI ]
CGAP (NCI)Hs.279842
Alternative Splicing GalleryENSG00000218510
Gene ExpressionLINC00339 [ NCBI-GEO ]   LINC00339 [ EBI - ARRAY_EXPRESS ]   LINC00339 [ SEEK ]   LINC00339 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00339 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)29092
GTEX Portal (Tissue expression)LINC00339
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00339
DMDM Disease mutations29092
Blocks (Seattle)LINC00339
Human Protein AtlasENSG00000218510
IPIIPI00023092   
Protein Interaction databases
FunCoupENSG00000218510
BioGRIDLINC00339
STRING (EMBL)LINC00339
ZODIACLINC00339
Ontologies - Pathways
Huge Navigator LINC00339 [HugePedia]
snp3D : Map Gene to Disease29092
BioCentury BCIQLINC00339
ClinGenLINC00339
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29092
Clinical trialLINC00339
Miscellaneous
canSAR (ICR)LINC00339 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00339
EVEXLINC00339
GoPubMedLINC00339
iHOPLINC00339
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 17:05:18 CEST 2017

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