Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC00341 (long intergenic non-protein coding RNA 341)

Identity

Alias_namesC14orf139
NCRNA00341
chromosome 14 open reading frame 139
non-protein coding RNA 341
Other alias
HGNC (Hugo) LINC00341
LocusID (NCBI) 79686
Atlas_Id 65381
Location 14q32.13  [Link to chromosome band 14q32]
Location_base_pair Starts at 95873604 and ends at 95876025 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CNTN4 (3p26.3) / LINC00341 (14q32.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00341   20353
Cards
Entrez_Gene (NCBI)LINC00341  79686  long intergenic non-protein coding RNA 341
AliasesC14orf139; NCRNA00341
GeneCards (Weizmann)LINC00341
Ensembl hg19 (Hinxton) [Gene_View]  chr14:95873604-95876025 [Contig_View]  LINC00341 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr14:95873604-95876025 [Contig_View]  LINC00341 [Vega]
TCGA cBioPortalLINC00341
AceView (NCBI)LINC00341
Genatlas (Paris)LINC00341
WikiGenes79686
SOURCE (Princeton)LINC00341
Genetics Home Reference (NIH)LINC00341
Genomic and cartography
GoldenPath hg19 (UCSC)LINC00341  -     chr14:95873604-95876025 -  14q32.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC00341  -     14q32.13   [Description]    (hg38-Dec_2013)
EnsemblLINC00341 - 14q32.13 [CytoView hg19]  LINC00341 - 14q32.13 [CytoView hg38]
Mapping of homologs : NCBILINC00341 [Mapview hg19]  LINC00341 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK024929 BC008299 CR457337
RefSeq transcript (Entrez)NM_024633
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)LINC00341
Cluster EST : UnigeneHs.41502 [ NCBI ]
CGAP (NCI)Hs.41502
Gene ExpressionLINC00341 [ NCBI-GEO ]   LINC00341 [ EBI - ARRAY_EXPRESS ]   LINC00341 [ SEEK ]   LINC00341 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00341 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79686
GTEX Portal (Tissue expression)LINC00341
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H761   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H761  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H761
Splice isoforms : SwissVarQ9H761
PhosPhoSitePlusQ9H761
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00341
DMDM Disease mutations79686
Blocks (Seattle)LINC00341
SuperfamilyQ9H761
Peptide AtlasQ9H761
HPRD16606
IPIIPI00002832   
Protein Interaction databases
DIP (DOE-UCLA)Q9H761
IntAct (EBI)Q9H761
BioGRIDLINC00341
STRING (EMBL)LINC00341
ZODIACLINC00341
Ontologies - Pathways
QuickGOQ9H761
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00341
Atlas of Cancer Signalling NetworkLINC00341
Wikipedia pathwaysLINC00341
Orthology - Evolution
OrthoDB79686
Phylogenetic Trees/Animal Genes : TreeFamLINC00341
HOVERGENQ9H761
HOGENOMQ9H761
Homologs : HomoloGeneLINC00341
Homology/Alignments : Family Browser (UCSC)LINC00341
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00341 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00341
dbVarLINC00341
ClinVarLINC00341
1000_GenomesLINC00341 
Exome Variant ServerLINC00341
ExAC (Exome Aggregation Consortium)LINC00341 (select the gene name)
Genetic variants : HAPMAP79686
Genomic Variants (DGV)LINC00341 [DGVbeta]
DECIPHER (Syndromes)14:95873604-95876025  
CONAN: Copy Number AnalysisLINC00341 
Mutations
ICGC Data PortalLINC00341 
TCGA Data PortalLINC00341 
Broad Tumor PortalLINC00341
OASIS PortalLINC00341 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00341
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00341
DgiDB (Drug Gene Interaction Database)LINC00341
DoCM (Curated mutations)LINC00341 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00341 (select a term)
intoGenLINC00341
Cancer3DLINC00341(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00341
Genetic Testing Registry LINC00341
NextProtQ9H761 [Medical]
TSGene79686
GENETestsLINC00341
Huge Navigator LINC00341 [HugePedia]
snp3D : Map Gene to Disease79686
BioCentury BCIQLINC00341
ClinGenLINC00341
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79686
Chemical/Pharm GKB GenePA128394717
Clinical trialLINC00341
Miscellaneous
canSAR (ICR)LINC00341 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00341
EVEXLINC00341
GoPubMedLINC00341
iHOPLINC00341
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:11:28 CET 2017

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