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LINC00342 (long intergenic non-protein coding RNA 342)

Identity

Alias_namesNCRNA00342
non-protein coding RNA 342
Other alias
HGNC (Hugo) LINC00342
LocusID (NCBI) 150759
Atlas_Id 65382
Location 2q11.1  [Link to chromosome band 2q11]
Location_base_pair Starts at 95807052 and ends at 95826981 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00342   42470
Cards
Entrez_Gene (NCBI)LINC00342  150759  long intergenic non-protein coding RNA 342
AliasesNCRNA00342
GeneCards (Weizmann)LINC00342
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:95807052-95826981 [Contig_View]  LINC00342 [Vega]
TCGA cBioPortalLINC00342
AceView (NCBI)LINC00342
Genatlas (Paris)LINC00342
WikiGenes150759
SOURCE (Princeton)LINC00342
Genetics Home Reference (NIH)LINC00342
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00342  -     chr2:95807052-95826981 -  2q11.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00342  -     2q11.1   [Description]    (hg19-Feb_2009)
EnsemblLINC00342 - 2q11.1 [CytoView hg19]  LINC00342 - 2q11.1 [CytoView hg38]
Mapping of homologs : NCBILINC00342 [Mapview hg19]  LINC00342 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057592 AK057596 AK093195 AL832439 BC117383
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00342
Cluster EST : UnigeneHs.503463 [ NCBI ]
CGAP (NCI)Hs.503463
Gene ExpressionLINC00342 [ NCBI-GEO ]   LINC00342 [ EBI - ARRAY_EXPRESS ]   LINC00342 [ SEEK ]   LINC00342 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00342 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)150759
GTEX Portal (Tissue expression)LINC00342
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00342
DMDM Disease mutations150759
Blocks (Seattle)LINC00342
IPIIPI00848305   
Protein Interaction databases
BioGRIDLINC00342
STRING (EMBL)LINC00342
ZODIACLINC00342
Ontologies - Pathways
Huge Navigator LINC00342 [HugePedia]
snp3D : Map Gene to Disease150759
BioCentury BCIQLINC00342
ClinGenLINC00342
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD150759
Clinical trialLINC00342
Miscellaneous
canSAR (ICR)LINC00342 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00342
EVEXLINC00342
GoPubMedLINC00342
iHOPLINC00342
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:54:02 CET 2017

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