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LINC00346 (long intergenic non-protein coding RNA 346)

Identity

Other aliasC13orf29
NCRNA00346
HGNC (Hugo) LINC00346
LocusID (NCBI) 283487
Atlas_Id 57216
Location 13q34  [Link to chromosome band 13q34]
Location_base_pair Starts at 110869213 and ends at 110870308 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00346   27492
Cards
Entrez_Gene (NCBI)LINC00346  283487  long intergenic non-protein coding RNA 346
AliasesC13orf29; NCRNA00346
GeneCards (Weizmann)LINC00346
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr13:110869213-110870308 [Contig_View]  LINC00346 [Vega]
TCGA cBioPortalLINC00346
AceView (NCBI)LINC00346
Genatlas (Paris)LINC00346
WikiGenes283487
SOURCE (Princeton)LINC00346
Genetics Home Reference (NIH)LINC00346
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00346  -     chr13:110869213-110870308 -  13q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00346  -     13q34   [Description]    (hg19-Feb_2009)
EnsemblLINC00346 - 13q34 [CytoView hg19]  LINC00346 - 13q34 [CytoView hg38]
Mapping of homologs : NCBILINC00346 [Mapview hg19]  LINC00346 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ295981 AK307956 AL831965 BC093904 BC104998
RefSeq transcript (Entrez)NM_178514
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00346
Cluster EST : UnigeneHs.245390 [ NCBI ]
CGAP (NCI)Hs.245390
Gene ExpressionLINC00346 [ NCBI-GEO ]   LINC00346 [ EBI - ARRAY_EXPRESS ]   LINC00346 [ SEEK ]   LINC00346 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00346 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283487
GTEX Portal (Tissue expression)LINC00346
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IVM7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IVM7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IVM7
Splice isoforms : SwissVarQ8IVM7
PhosPhoSitePlusQ8IVM7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00346
DMDM Disease mutations283487
Blocks (Seattle)LINC00346
SuperfamilyQ8IVM7
Peptide AtlasQ8IVM7
IPIIPI00217066   
Protein Interaction databases
DIP (DOE-UCLA)Q8IVM7
IntAct (EBI)Q8IVM7
BioGRIDLINC00346
STRING (EMBL)LINC00346
ZODIACLINC00346
Ontologies - Pathways
QuickGOQ8IVM7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00346
Atlas of Cancer Signalling NetworkLINC00346
Wikipedia pathwaysLINC00346
Orthology - Evolution
OrthoDB283487
Phylogenetic Trees/Animal Genes : TreeFamLINC00346
HOVERGENQ8IVM7
HOGENOMQ8IVM7
Homologs : HomoloGeneLINC00346
Homology/Alignments : Family Browser (UCSC)LINC00346
Gene fusions - Rearrangements
Tumor Fusion PortalLINC00346
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00346 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00346
dbVarLINC00346
ClinVarLINC00346
1000_GenomesLINC00346 
Exome Variant ServerLINC00346
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP283487
Genomic Variants (DGV)LINC00346 [DGVbeta]
DECIPHERLINC00346 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00346 
Mutations
ICGC Data PortalLINC00346 
TCGA Data PortalLINC00346 
Broad Tumor PortalLINC00346
OASIS PortalLINC00346 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLINC00346  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLINC00346
BioMutasearch LINC00346
DgiDB (Drug Gene Interaction Database)LINC00346
DoCM (Curated mutations)LINC00346 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00346 (select a term)
intoGenLINC00346
Cancer3DLINC00346(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLINC00346
MedgenLINC00346
Genetic Testing Registry LINC00346
NextProtQ8IVM7 [Medical]
TSGene283487
GENETestsLINC00346
Target ValidationLINC00346
Huge Navigator LINC00346 [HugePedia]
snp3D : Map Gene to Disease283487
BioCentury BCIQLINC00346
ClinGenLINC00346
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283487
Chemical/Pharm GKB GenePA147358504
Clinical trialLINC00346
Miscellaneous
canSAR (ICR)LINC00346 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00346
EVEXLINC00346
GoPubMedLINC00346
iHOPLINC00346
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:19:56 CET 2017

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