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LINC00358 (long intergenic non-protein coding RNA 358)

Identity

Other alias-
HGNC (Hugo) LINC00358
LocusID (NCBI) 100874143
Atlas_Id 65391
Location 13q21.31  [Link to chromosome band 13q21]
Location_base_pair Starts at 62003525 and ends at 62029548 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00358   42678
Cards
Entrez_Gene (NCBI)LINC00358  100874143  long intergenic non-protein coding RNA 358
Aliases
GeneCards (Weizmann)LINC00358
Ensembl hg19 (Hinxton)ENSG00000229578 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000229578 [Gene_View]  chr13:62003525-62029548 [Contig_View]  LINC00358 [Vega]
ICGC DataPortalENSG00000229578
TCGA cBioPortalLINC00358
AceView (NCBI)LINC00358
Genatlas (Paris)LINC00358
WikiGenes100874143
SOURCE (Princeton)LINC00358
Genetics Home Reference (NIH)LINC00358
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00358  -     chr13:62003525-62029548 -  13q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00358  -     13q21.31   [Description]    (hg19-Feb_2009)
EnsemblLINC00358 - 13q21.31 [CytoView hg19]  LINC00358 - 13q21.31 [CytoView hg38]
Mapping of homologs : NCBILINC00358 [Mapview hg19]  LINC00358 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC037867
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00358
Cluster EST : UnigeneHs.552684 [ NCBI ]
CGAP (NCI)Hs.552684
Alternative Splicing GalleryENSG00000229578
Gene ExpressionLINC00358 [ NCBI-GEO ]   LINC00358 [ EBI - ARRAY_EXPRESS ]   LINC00358 [ SEEK ]   LINC00358 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00358 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100874143
GTEX Portal (Tissue expression)LINC00358
Human Protein AtlasENSG00000229578-LINC00358 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00358
DMDM Disease mutations100874143
Blocks (Seattle)LINC00358
Human Protein Atlas [tissue]ENSG00000229578-LINC00358 [tissue]
Protein Interaction databases
FunCoupENSG00000229578
BioGRIDLINC00358
STRING (EMBL)LINC00358
ZODIACLINC00358
Ontologies - Pathways
Huge Navigator LINC00358 [HugePedia]
snp3D : Map Gene to Disease100874143
BioCentury BCIQLINC00358
ClinGenLINC00358
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100874143
Clinical trialLINC00358
Miscellaneous
canSAR (ICR)LINC00358 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00358
EVEXLINC00358
GoPubMedLINC00358
iHOPLINC00358
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:36:41 CET 2017

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