Atlas of Genetics and Cytogenetics in Oncology and Haematology

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LINC00377 (long intergenic non-protein coding RNA 377)


Alias (NCBI)TCONS_00021861
HGNC (Hugo) LINC00377
HGNC Alias symbTCONS_00021861
LocusID (NCBI) 103724386
Atlas_Id 65397
Location 13q31.1  [Link to chromosome band 13q31]
Location_base_pair Starts at 81018391 and ends at 81044442 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)


Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

HGNC (Hugo)LINC00377   42703
Entrez_Gene (NCBI)LINC00377    long intergenic non-protein coding RNA 377
GeneCards (Weizmann)LINC00377
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr13:81018391-81044442 [Contig_View]  LINC00377 [Vega]
TCGA cBioPortalLINC00377
AceView (NCBI)LINC00377
Genatlas (Paris)LINC00377
SOURCE (Princeton)LINC00377
Genetics Home Reference (NIH)LINC00377
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00377  -     chr13:81018391-81044442 +  13q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00377  -     13q31.1   [Description]    (hg19-Feb_2009)
GoldenPathLINC00377 - 13q31.1 [CytoView hg19]  LINC00377 - 13q31.1 [CytoView hg38]
Genome Data Viewer NCBILINC00377 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AI039503 BX119215
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00377
Gene ExpressionLINC00377 [ NCBI-GEO ]   LINC00377 [ EBI - ARRAY_EXPRESS ]   LINC00377 [ SEEK ]   LINC00377 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00377 [ Firebrowse - Broad ]
GenevisibleExpression of LINC00377 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)103724386
GTEX Portal (Tissue expression)LINC00377
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00377
Protein Interaction databases
Ontologies - Pathways
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:56:00 CEST 2021

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