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LINC00381 (long intergenic non-protein coding RNA 381)

Identity

Other alias-
HGNC (Hugo) LINC00381
LocusID (NCBI) 100874151
Atlas_Id 65401
Location 13q22.1  [Link to chromosome band 13q22]
Location_base_pair Starts at 74419173 and ends at 74435159 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00381   42708
Cards
Entrez_Gene (NCBI)LINC00381  100874151  long intergenic non-protein coding RNA 381
Aliases
GeneCards (Weizmann)LINC00381
Ensembl hg19 (Hinxton)ENSG00000226240 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000226240 [Gene_View]  chr13:74419173-74435159 [Contig_View]  LINC00381 [Vega]
ICGC DataPortalENSG00000226240
TCGA cBioPortalLINC00381
AceView (NCBI)LINC00381
Genatlas (Paris)LINC00381
WikiGenes100874151
SOURCE (Princeton)LINC00381
Genetics Home Reference (NIH)LINC00381
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00381  -     chr13:74419173-74435159 +  13q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00381  -     13q22.1   [Description]    (hg19-Feb_2009)
EnsemblLINC00381 - 13q22.1 [CytoView hg19]  LINC00381 - 13q22.1 [CytoView hg38]
Mapping of homologs : NCBILINC00381 [Mapview hg19]  LINC00381 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA397742 AA421131
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00381
Cluster EST : UnigeneHs.743188 [ NCBI ]
CGAP (NCI)Hs.743188
Alternative Splicing GalleryENSG00000226240
Gene ExpressionLINC00381 [ NCBI-GEO ]   LINC00381 [ EBI - ARRAY_EXPRESS ]   LINC00381 [ SEEK ]   LINC00381 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00381 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100874151
GTEX Portal (Tissue expression)LINC00381
Human Protein AtlasENSG00000226240-LINC00381 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00381
DMDM Disease mutations100874151
Blocks (Seattle)LINC00381
Human Protein Atlas [tissue]ENSG00000226240-LINC00381 [tissue]
Protein Interaction databases
FunCoupENSG00000226240
BioGRIDLINC00381
STRING (EMBL)LINC00381
ZODIACLINC00381
Ontologies - Pathways
Huge Navigator LINC00381 [HugePedia]
snp3D : Map Gene to Disease100874151
BioCentury BCIQLINC00381
ClinGenLINC00381
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100874151
Clinical trialLINC00381
Miscellaneous
canSAR (ICR)LINC00381 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00381
EVEXLINC00381
GoPubMedLINC00381
iHOPLINC00381
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:36:45 CET 2017

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