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LINC00395 (long intergenic non-protein coding RNA 395)

Identity

Other alias-
HGNC (Hugo) LINC00395
LocusID (NCBI) 100874157
Atlas_Id 65406
Location 13q21.31  [Link to chromosome band 13q21]
Location_base_pair Starts at 63667682 and ends at 63738018 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00395   42723
Cards
Entrez_Gene (NCBI)LINC00395  100874157  long intergenic non-protein coding RNA 395
Aliases
GeneCards (Weizmann)LINC00395
Ensembl hg19 (Hinxton)ENSG00000231061 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000231061 [Gene_View]  chr13:63667682-63738018 [Contig_View]  LINC00395 [Vega]
ICGC DataPortalENSG00000231061
TCGA cBioPortalLINC00395
AceView (NCBI)LINC00395
Genatlas (Paris)LINC00395
WikiGenes100874157
SOURCE (Princeton)LINC00395
Genetics Home Reference (NIH)LINC00395
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00395  -     chr13:63667682-63738018 -  13q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00395  -     13q21.31   [Description]    (hg19-Feb_2009)
EnsemblLINC00395 - 13q21.31 [CytoView hg19]  LINC00395 - 13q21.31 [CytoView hg38]
Mapping of homologs : NCBILINC00395 [Mapview hg19]  LINC00395 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI352571 AW592306 BE044201
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00395
Cluster EST : UnigeneHs.735640 [ NCBI ]
CGAP (NCI)Hs.735640
Alternative Splicing GalleryENSG00000231061
Gene ExpressionLINC00395 [ NCBI-GEO ]   LINC00395 [ EBI - ARRAY_EXPRESS ]   LINC00395 [ SEEK ]   LINC00395 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00395 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100874157
GTEX Portal (Tissue expression)LINC00395
Human Protein AtlasENSG00000231061-LINC00395 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00395
DMDM Disease mutations100874157
Blocks (Seattle)LINC00395
Human Protein Atlas [tissue]ENSG00000231061-LINC00395 [tissue]
Protein Interaction databases
FunCoupENSG00000231061
BioGRIDLINC00395
STRING (EMBL)LINC00395
ZODIACLINC00395
Ontologies - Pathways
Huge Navigator LINC00395 [HugePedia]
snp3D : Map Gene to Disease100874157
BioCentury BCIQLINC00395
ClinGenLINC00395
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100874157
Clinical trialLINC00395
Miscellaneous
canSAR (ICR)LINC00395 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00395
EVEXLINC00395
GoPubMedLINC00395
iHOPLINC00395
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:36:46 CET 2017

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