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LINC00396 (long intergenic non-protein coding RNA 396)

Identity

Other alias-
HGNC (Hugo) LINC00396
LocusID (NCBI) 104355146
Atlas_Id 77602
Location 13q34  [Link to chromosome band 13q34]
Location_base_pair Starts at 110053285 and ends at 110054952 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00396   42724
Cards
Entrez_Gene (NCBI)LINC00396  104355146  long intergenic non-protein coding RNA 396
Aliases
GeneCards (Weizmann)LINC00396
Ensembl hg19 (Hinxton)ENSG00000231428 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000231428 [Gene_View]  chr13:110053285-110054952 [Contig_View]  LINC00396 [Vega]
ICGC DataPortalENSG00000231428
TCGA cBioPortalLINC00396
AceView (NCBI)LINC00396
Genatlas (Paris)LINC00396
WikiGenes104355146
SOURCE (Princeton)LINC00396
Genetics Home Reference (NIH)LINC00396
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00396  -     chr13:110053285-110054952 +  13q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00396  -     13q34   [Description]    (hg19-Feb_2009)
EnsemblLINC00396 - 13q34 [CytoView hg19]  LINC00396 - 13q34 [CytoView hg38]
Mapping of homologs : NCBILINC00396 [Mapview hg19]  LINC00396 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA927226
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00396
Cluster EST : UnigeneHs.508690 [ NCBI ]
CGAP (NCI)Hs.508690
Alternative Splicing GalleryENSG00000231428
Gene ExpressionLINC00396 [ NCBI-GEO ]   LINC00396 [ EBI - ARRAY_EXPRESS ]   LINC00396 [ SEEK ]   LINC00396 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00396 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)104355146
GTEX Portal (Tissue expression)LINC00396
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00396
DMDM Disease mutations104355146
Blocks (Seattle)LINC00396
Human Protein AtlasENSG00000231428
Protein Interaction databases
FunCoupENSG00000231428
BioGRIDLINC00396
STRING (EMBL)LINC00396
ZODIACLINC00396
Ontologies - Pathways
Huge Navigator LINC00396 [HugePedia]
snp3D : Map Gene to Disease104355146
BioCentury BCIQLINC00396
ClinGenLINC00396
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD104355146
Clinical trialLINC00396
Miscellaneous
canSAR (ICR)LINC00396 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00396
EVEXLINC00396
GoPubMedLINC00396
iHOPLINC00396
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:13:04 CEST 2017

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