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LINC00397 (long intergenic non-protein coding RNA 397)

Identity

Alias_symbol (synonym)TCONS_00021582
Other alias-
HGNC (Hugo) LINC00397
LocusID (NCBI) 101930749
Atlas_Id 65407
Location 13q31.2  [Link to chromosome band 13q31]
Location_base_pair Starts at 88453298 and ends at 88462775 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00397   42725
Cards
Entrez_Gene (NCBI)LINC00397  101930749  long intergenic non-protein coding RNA 397
Aliases
GeneCards (Weizmann)LINC00397
Ensembl hg19 (Hinxton)ENSG00000223404 [Gene_View]  chr13:88453298-88462775 [Contig_View]  LINC00397 [Vega]
Ensembl hg38 (Hinxton)ENSG00000223404 [Gene_View]  chr13:88453298-88462775 [Contig_View]  LINC00397 [Vega]
ICGC DataPortalENSG00000223404
TCGA cBioPortalLINC00397
AceView (NCBI)LINC00397
Genatlas (Paris)LINC00397
WikiGenes101930749
SOURCE (Princeton)LINC00397
Genetics Home Reference (NIH)LINC00397
Genomic and cartography
GoldenPath hg19 (UCSC)LINC00397  -     chr13:88453298-88462775 -  13q31.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC00397  -     13q31.2   [Description]    (hg38-Dec_2013)
EnsemblLINC00397 - 13q31.2 [CytoView hg19]  LINC00397 - 13q31.2 [CytoView hg38]
Mapping of homologs : NCBILINC00397 [Mapview hg19]  LINC00397 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BX097373 HG505796 HG505797
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000013 NC_018924 NT_009952 NW_004929389
Consensus coding sequences : CCDS (NCBI)LINC00397
Cluster EST : UnigeneHs.539610 [ NCBI ]
CGAP (NCI)Hs.539610
Alternative Splicing GalleryENSG00000223404
Gene ExpressionLINC00397 [ NCBI-GEO ]   LINC00397 [ EBI - ARRAY_EXPRESS ]   LINC00397 [ SEEK ]   LINC00397 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00397 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101930749
GTEX Portal (Tissue expression)LINC00397
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00397
DMDM Disease mutations101930749
Blocks (Seattle)LINC00397
Human Protein AtlasENSG00000223404
Protein Interaction databases
FunCoupENSG00000223404
BioGRIDLINC00397
STRING (EMBL)LINC00397
ZODIACLINC00397
Ontologies - Pathways
Huge Navigator LINC00397 [HugePedia]
snp3D : Map Gene to Disease101930749
BioCentury BCIQLINC00397
ClinGenLINC00397
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101930749
Clinical trialLINC00397
Miscellaneous
canSAR (ICR)LINC00397 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00397
EVEXLINC00397
GoPubMedLINC00397
iHOPLINC00397
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:11:36 CET 2017

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