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LINC00398 (long intergenic non-protein coding RNA 398)

Identity

Other alias-
HGNC (Hugo) LINC00398
LocusID (NCBI) 100874158
Atlas_Id 65408
Location 13q12.3  [Link to chromosome band 13q12]
Location_base_pair Starts at 31377343 and ends at 31384782 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00398   42727
Cards
Entrez_Gene (NCBI)LINC00398  100874158  long intergenic non-protein coding RNA 398
Aliases
GeneCards (Weizmann)LINC00398
Ensembl hg19 (Hinxton)ENSG00000237879 [Gene_View]  chr13:31377343-31384782 [Contig_View]  LINC00398 [Vega]
Ensembl hg38 (Hinxton)ENSG00000237879 [Gene_View]  chr13:31377343-31384782 [Contig_View]  LINC00398 [Vega]
ICGC DataPortalENSG00000237879
TCGA cBioPortalLINC00398
AceView (NCBI)LINC00398
Genatlas (Paris)LINC00398
WikiGenes100874158
SOURCE (Princeton)LINC00398
Genetics Home Reference (NIH)LINC00398
Genomic and cartography
GoldenPath hg19 (UCSC)LINC00398  -     chr13:31377343-31384782 +  13q12.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC00398  -     13q12.3   [Description]    (hg38-Dec_2013)
EnsemblLINC00398 - 13q12.3 [CytoView hg19]  LINC00398 - 13q12.3 [CytoView hg38]
Mapping of homologs : NCBILINC00398 [Mapview hg19]  LINC00398 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DB005052 HG505509
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000013 NC_018924 NT_024524 NW_004929388
Consensus coding sequences : CCDS (NCBI)LINC00398
Cluster EST : UnigeneHs.577982 [ NCBI ]
CGAP (NCI)Hs.577982
Alternative Splicing GalleryENSG00000237879
Gene ExpressionLINC00398 [ NCBI-GEO ]   LINC00398 [ EBI - ARRAY_EXPRESS ]   LINC00398 [ SEEK ]   LINC00398 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00398 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100874158
GTEX Portal (Tissue expression)LINC00398
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00398
DMDM Disease mutations100874158
Blocks (Seattle)LINC00398
Human Protein AtlasENSG00000237879
Protein Interaction databases
FunCoupENSG00000237879
BioGRIDLINC00398
STRING (EMBL)LINC00398
ZODIACLINC00398
Ontologies - Pathways
Huge Navigator LINC00398 [HugePedia]
snp3D : Map Gene to Disease100874158
BioCentury BCIQLINC00398
ClinGenLINC00398
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100874158
Clinical trialLINC00398
Miscellaneous
canSAR (ICR)LINC00398 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00398
EVEXLINC00398
GoPubMedLINC00398
iHOPLINC00398
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:11:36 CET 2017

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