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LINC00399 (long intergenic non-protein coding RNA 399)

Identity

Alias_symbol (synonym)TCONS_00021596
Other alias
HGNC (Hugo) LINC00399
LocusID (NCBI) 104326054
Atlas_Id 76844
Location 13q33.3  [Link to chromosome band 13q33]
Location_base_pair Starts at 109400696 and ends at 109401639 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00399   42728
Cards
Entrez_Gene (NCBI)LINC00399  104326054  long intergenic non-protein coding RNA 399
AliasesTCONS_00021596
GeneCards (Weizmann)LINC00399
Ensembl hg19 (Hinxton)ENSG00000229792 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000229792 [Gene_View]  chr13:109400696-109401639 [Contig_View]  LINC00399 [Vega]
ICGC DataPortalENSG00000229792
TCGA cBioPortalLINC00399
AceView (NCBI)LINC00399
Genatlas (Paris)LINC00399
WikiGenes104326054
SOURCE (Princeton)LINC00399
Genetics Home Reference (NIH)LINC00399
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00399  -     chr13:109400696-109401639 +  13q33.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00399  -     13q33.3   [Description]    (hg19-Feb_2009)
EnsemblLINC00399 - 13q33.3 [CytoView hg19]  LINC00399 - 13q33.3 [CytoView hg38]
Mapping of homologs : NCBILINC00399 [Mapview hg19]  LINC00399 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BX111569
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00399
Cluster EST : UnigeneHs.569298 [ NCBI ]
CGAP (NCI)Hs.569298
Alternative Splicing GalleryENSG00000229792
Gene ExpressionLINC00399 [ NCBI-GEO ]   LINC00399 [ EBI - ARRAY_EXPRESS ]   LINC00399 [ SEEK ]   LINC00399 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00399 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)104326054
GTEX Portal (Tissue expression)LINC00399
Human Protein AtlasENSG00000229792-LINC00399 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00399
DMDM Disease mutations104326054
Blocks (Seattle)LINC00399
Human Protein Atlas [tissue]ENSG00000229792-LINC00399 [tissue]
Protein Interaction databases
FunCoupENSG00000229792
BioGRIDLINC00399
STRING (EMBL)LINC00399
ZODIACLINC00399
Ontologies - Pathways
Huge Navigator LINC00399 [HugePedia]
snp3D : Map Gene to Disease104326054
BioCentury BCIQLINC00399
ClinGenLINC00399
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD104326054
Clinical trialLINC00399
Miscellaneous
canSAR (ICR)LINC00399 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00399
EVEXLINC00399
GoPubMedLINC00399
iHOPLINC00399
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:36:47 CET 2017

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