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LINC00399 (long intergenic non-protein coding RNA 399)

Identity

Alias (NCBI)TCONS_00021596
HGNC (Hugo) LINC00399
HGNC Alias symbTCONS_00021596
LocusID (NCBI) 104326054
Atlas_Id 76844
Location 13q33.3  [Link to chromosome band 13q33]
Location_base_pair Starts at 109400696 and ends at 109401639 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)LINC00399   42728
Cards
Entrez_Gene (NCBI)LINC00399    long intergenic non-protein coding RNA 399
AliasesTCONS_00021596
GeneCards (Weizmann)LINC00399
Ensembl hg19 (Hinxton)ENSG00000229792 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000229792 [Gene_View]  ENSG00000229792 [Sequence]  chr13:109400696-109401639 [Contig_View]  LINC00399 [Vega]
ICGC DataPortalENSG00000229792
TCGA cBioPortalLINC00399
AceView (NCBI)LINC00399
Genatlas (Paris)LINC00399
SOURCE (Princeton)LINC00399
Genetics Home Reference (NIH)LINC00399
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00399  -     chr13:109400696-109401639 +  13q33.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00399  -     13q33.3   [Description]    (hg19-Feb_2009)
GoldenPathLINC00399 - 13q33.3 [CytoView hg19]  LINC00399 - 13q33.3 [CytoView hg38]
ImmunoBaseENSG00000229792
Genome Data Viewer NCBILINC00399 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BX111569
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00399
Gene ExpressionLINC00399 [ NCBI-GEO ]   LINC00399 [ EBI - ARRAY_EXPRESS ]   LINC00399 [ SEEK ]   LINC00399 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00399 [ Firebrowse - Broad ]
GenevisibleExpression of LINC00399 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)104326054
GTEX Portal (Tissue expression)LINC00399
Human Protein AtlasENSG00000229792-LINC00399 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00399
Human Protein Atlas [tissue]ENSG00000229792-LINC00399 [tissue]
Protein Interaction databases
BioGRIDLINC00399
STRING (EMBL)LINC00399
ZODIACLINC00399
Ontologies - Pathways
Litterature
GeneRIFsGene References Into Functions (Entrez)
EVEXLINC00399
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:56:03 CEST 2021

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