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LINC00402 (long intergenic non-protein coding RNA 402)

Identity

Alias (NCBI)-
HGNC (Hugo) LINC00402
LocusID (NCBI) 100507612
Atlas_Id 78797
Location 13q22.1  [Link to chromosome band 13q22]
Location_base_pair Starts at 74231444 and ends at 74259976 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)LINC00402   42732
Cards
Entrez_Gene (NCBI)LINC00402    long intergenic non-protein coding RNA 402
Aliases
GeneCards (Weizmann)LINC00402
Ensembl hg19 (Hinxton)ENSG00000235532 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000235532 [Gene_View]  ENSG00000235532 [Sequence]  chr13:74231444-74259976 [Contig_View]  LINC00402 [Vega]
ICGC DataPortalENSG00000235532
TCGA cBioPortalLINC00402
AceView (NCBI)LINC00402
Genatlas (Paris)LINC00402
SOURCE (Princeton)LINC00402
Genetics Home Reference (NIH)LINC00402
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00402  -     chr13:74231444-74259976 +  13q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00402  -     13q22.1   [Description]    (hg19-Feb_2009)
GoldenPathLINC00402 - 13q22.1 [CytoView hg19]  LINC00402 - 13q22.1 [CytoView hg38]
ImmunoBaseENSG00000235532
Genome Data Viewer NCBILINC00402 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK056689 DA938088
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00402
Gene ExpressionLINC00402 [ NCBI-GEO ]   LINC00402 [ EBI - ARRAY_EXPRESS ]   LINC00402 [ SEEK ]   LINC00402 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00402 [ Firebrowse - Broad ]
GenevisibleExpression of LINC00402 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100507612
GTEX Portal (Tissue expression)LINC00402
Human Protein AtlasENSG00000235532-LINC00402 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00402
Human Protein Atlas [tissue]ENSG00000235532-LINC00402 [tissue]
Protein Interaction databases
BioGRIDLINC00402
STRING (EMBL)LINC00402
ZODIACLINC00402
Ontologies - Pathways
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXLINC00402
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:56:03 CEST 2021

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