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LINC00415 (long intergenic non-protein coding RNA 415)

Identity

Other alias-
HGNC (Hugo) LINC00415
LocusID (NCBI) 107984009
Atlas_Id 79952
Location 13q12.13  [Link to chromosome band 13q12]
Location_base_pair Starts at 26052276 and ends at 26059522 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC00415   42748
Cards
Entrez_Gene (NCBI)LINC00415  107984009  long intergenic non-protein coding RNA 415
Aliases
GeneCards (Weizmann)LINC00415
Ensembl hg19 (Hinxton)ENSG00000231983 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000231983 [Gene_View]  chr13:26052276-26059522 [Contig_View]  LINC00415 [Vega]
ICGC DataPortalENSG00000231983
TCGA cBioPortalLINC00415
AceView (NCBI)LINC00415
Genatlas (Paris)LINC00415
WikiGenes107984009
SOURCE (Princeton)LINC00415
Genetics Home Reference (NIH)LINC00415
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00415  -     chr13:26052276-26059522 -  13q12.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00415  -     13q12.13   [Description]    (hg19-Feb_2009)
EnsemblLINC00415 - 13q12.13 [CytoView hg19]  LINC00415 - 13q12.13 [CytoView hg38]
Mapping of homologs : NCBILINC00415 [Mapview hg19]  LINC00415 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00415
Alternative Splicing GalleryENSG00000231983
Gene ExpressionLINC00415 [ NCBI-GEO ]   LINC00415 [ EBI - ARRAY_EXPRESS ]   LINC00415 [ SEEK ]   LINC00415 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00415 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)107984009
GTEX Portal (Tissue expression)LINC00415
Human Protein AtlasENSG00000231983-LINC00415 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00415
DMDM Disease mutations107984009
Blocks (Seattle)LINC00415
Human Protein Atlas [tissue]ENSG00000231983-LINC00415 [tissue]
Protein Interaction databases
FunCoupENSG00000231983
BioGRIDLINC00415
STRING (EMBL)LINC00415
ZODIACLINC00415
Ontologies - Pathways
Huge Navigator LINC00415 [HugePedia]
snp3D : Map Gene to Disease107984009
BioCentury BCIQLINC00415
ClinGenLINC00415
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD107984009
Clinical trialLINC00415
Miscellaneous
canSAR (ICR)LINC00415 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00415
EVEXLINC00415
GoPubMedLINC00415
iHOPLINC00415
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:28:15 CET 2017

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