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LINC00417 (long intergenic non-protein coding RNA 417)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 100874164
Atlas_Id 65415
Location 13q11  [Link to chromosome band 13q11]
Location_base_pair Starts at 18738100 and ends at 18740099 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LINC00417  100874164  long intergenic non-protein coding RNA 417
Aliases
GeneCards (Weizmann)LINC00417
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr13:18738100-18740099 [Contig_View]  LINC00417 [Vega]
TCGA cBioPortalLINC00417
AceView (NCBI)LINC00417
Genatlas (Paris)LINC00417
WikiGenes100874164
SOURCE (Princeton)LINC00417
Genetics Home Reference (NIH)LINC00417
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00417  -     chr13:18738100-18740099 -  13q11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00417  -     13q11   [Description]    (hg19-Feb_2009)
EnsemblLINC00417 - 13q11 [CytoView hg19]  LINC00417 - 13q11 [CytoView hg38]
Mapping of homologs : NCBILINC00417 [Mapview hg19]  LINC00417 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DB339619
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000013 NC_018924 NT_187594
Consensus coding sequences : CCDS (NCBI)LINC00417
Cluster EST : UnigeneHs.739604 [ NCBI ]
CGAP (NCI)Hs.739604
Gene ExpressionLINC00417 [ NCBI-GEO ]   LINC00417 [ EBI - ARRAY_EXPRESS ]   LINC00417 [ SEEK ]   LINC00417 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00417 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100874164
GTEX Portal (Tissue expression)LINC00417
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00417
DMDM Disease mutations100874164
Blocks (Seattle)LINC00417
Protein Interaction databases
BioGRIDLINC00417
STRING (EMBL)LINC00417
ZODIACLINC00417
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease100874164
BioCentury BCIQLINC00417
ClinGenLINC00417
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100874164
Clinical trialLINC00417
Miscellaneous
canSAR (ICR)LINC00417 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00417
EVEXLINC00417
GoPubMedLINC00417
iHOPLINC00417
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:56:30 CEST 2017

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