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LINC00428 (long intergenic non-protein coding RNA 428)

Identity

Other alias-
HGNC (Hugo) LINC00428
LocusID (NCBI) 104355147
Atlas_Id 76764
Location 13q14.11  [Link to chromosome band 13q14]
Location_base_pair Starts at 42850247 and ends at 42872744 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00428   42763
Cards
Entrez_Gene (NCBI)LINC00428  104355147  long intergenic non-protein coding RNA 428
Aliases
GeneCards (Weizmann)LINC00428
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr13:42850247-42872744 [Contig_View]  LINC00428 [Vega]
TCGA cBioPortalLINC00428
AceView (NCBI)LINC00428
Genatlas (Paris)LINC00428
WikiGenes104355147
SOURCE (Princeton)LINC00428
Genetics Home Reference (NIH)LINC00428
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00428  -     chr13:42850247-42872744 -  13q14.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00428  -     13q14.11   [Description]    (hg19-Feb_2009)
EnsemblLINC00428 - 13q14.11 [CytoView hg19]  LINC00428 - 13q14.11 [CytoView hg38]
Mapping of homologs : NCBILINC00428 [Mapview hg19]  LINC00428 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA206719 CN413844
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00428
Cluster EST : UnigeneHs.633967 [ NCBI ]
CGAP (NCI)Hs.633967
Gene ExpressionLINC00428 [ NCBI-GEO ]   LINC00428 [ EBI - ARRAY_EXPRESS ]   LINC00428 [ SEEK ]   LINC00428 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00428 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)104355147
GTEX Portal (Tissue expression)LINC00428
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00428
DMDM Disease mutations104355147
Blocks (Seattle)LINC00428
Protein Interaction databases
BioGRIDLINC00428
STRING (EMBL)LINC00428
ZODIACLINC00428
Ontologies - Pathways
Huge Navigator LINC00428 [HugePedia]
snp3D : Map Gene to Disease104355147
BioCentury BCIQLINC00428
ClinGenLINC00428
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD104355147
Clinical trialLINC00428
Miscellaneous
canSAR (ICR)LINC00428 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00428
EVEXLINC00428
GoPubMedLINC00428
iHOPLINC00428
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:28:16 CET 2017

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