Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC00434 (long intergenic non-protein coding RNA 434)

Identity

Other alias-
HGNC (Hugo) LINC00434
LocusID (NCBI) 100874169
Atlas_Id 76592
Location 13q21.2  [Link to chromosome band 13q21]
Location_base_pair Starts at 60214347 and ends at 60268104 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00434   42769
Cards
Entrez_Gene (NCBI)LINC00434  100874169  long intergenic non-protein coding RNA 434
Aliases
GeneCards (Weizmann)LINC00434
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr13:60214347-60268104 [Contig_View]  LINC00434 [Vega]
TCGA cBioPortalLINC00434
AceView (NCBI)LINC00434
Genatlas (Paris)LINC00434
WikiGenes100874169
SOURCE (Princeton)LINC00434
Genetics Home Reference (NIH)LINC00434
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00434  -     chr13:60214347-60268104 -  13q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00434  -     13q21.2   [Description]    (hg19-Feb_2009)
EnsemblLINC00434 - 13q21.2 [CytoView hg19]  LINC00434 - 13q21.2 [CytoView hg38]
Mapping of homologs : NCBILINC00434 [Mapview hg19]  LINC00434 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI521184 BG221120 BX103562
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00434
Cluster EST : UnigeneHs.736761 [ NCBI ]
CGAP (NCI)Hs.736761
Gene ExpressionLINC00434 [ NCBI-GEO ]   LINC00434 [ EBI - ARRAY_EXPRESS ]   LINC00434 [ SEEK ]   LINC00434 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00434 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100874169
GTEX Portal (Tissue expression)LINC00434
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00434
DMDM Disease mutations100874169
Blocks (Seattle)LINC00434
Protein Interaction databases
BioGRIDLINC00434
STRING (EMBL)LINC00434
ZODIACLINC00434
Ontologies - Pathways
Huge Navigator LINC00434 [HugePedia]
snp3D : Map Gene to Disease100874169
BioCentury BCIQLINC00434
ClinGenLINC00434
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100874169
Clinical trialLINC00434
Miscellaneous
canSAR (ICR)LINC00434 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00434
EVEXLINC00434
GoPubMedLINC00434
iHOPLINC00434
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:28:17 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.