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LINC00440 (long intergenic non-protein coding RNA 440)

Identity

Other alias-
HGNC (Hugo) LINC00440
LocusID (NCBI) 100874172
Atlas_Id 77582
Location 13q31.2  [Link to chromosome band 13q31]
Location_base_pair Starts at 89235291 and ends at 89280240 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00440   42777
Cards
Entrez_Gene (NCBI)LINC00440  100874172  long intergenic non-protein coding RNA 440
Aliases
GeneCards (Weizmann)LINC00440
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr13:89235291-89280240 [Contig_View]  LINC00440 [Vega]
TCGA cBioPortalLINC00440
AceView (NCBI)LINC00440
Genatlas (Paris)LINC00440
WikiGenes100874172
SOURCE (Princeton)LINC00440
Genetics Home Reference (NIH)LINC00440
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00440  -     chr13:89235291-89280240 +  13q31.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00440  -     13q31.2   [Description]    (hg19-Feb_2009)
EnsemblLINC00440 - 13q31.2 [CytoView hg19]  LINC00440 - 13q31.2 [CytoView hg38]
Mapping of homologs : NCBILINC00440 [Mapview hg19]  LINC00440 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BG182545 BG209582
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00440
Cluster EST : UnigeneHs.569291 [ NCBI ]
CGAP (NCI)Hs.569291
Gene ExpressionLINC00440 [ NCBI-GEO ]   LINC00440 [ EBI - ARRAY_EXPRESS ]   LINC00440 [ SEEK ]   LINC00440 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00440 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100874172
GTEX Portal (Tissue expression)LINC00440
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00440
DMDM Disease mutations100874172
Blocks (Seattle)LINC00440
Protein Interaction databases
BioGRIDLINC00440
STRING (EMBL)LINC00440
ZODIACLINC00440
Ontologies - Pathways
Huge Navigator LINC00440 [HugePedia]
snp3D : Map Gene to Disease100874172
BioCentury BCIQLINC00440
ClinGenLINC00440
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100874172
Clinical trialLINC00440
Miscellaneous
canSAR (ICR)LINC00440 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00440
EVEXLINC00440
GoPubMedLINC00440
iHOPLINC00440
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:36:51 CET 2017

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